Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   KX728_RS01835 Genome accession   NZ_CP079724
Coordinates   361330..362379 (+) Length   349 a.a.
NCBI ID   WP_215804998.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 356330..367379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS01810 (KX728_01810) dnaJ 357899..359035 (+) 1137 WP_001066315.1 molecular chaperone DnaJ -
  KX728_RS01815 (KX728_01815) - 359113..359772 (-) 660 WP_215805001.1 hypothetical protein -
  KX728_RS01820 (KX728_01820) - 359836..360114 (-) 279 WP_000777740.1 hypothetical protein -
  KX728_RS01825 (KX728_01825) - 360124..360534 (-) 411 WP_215805000.1 HIT family protein -
  KX728_RS01830 (KX728_01830) pptA 360602..361333 (+) 732 WP_215804999.1 ABC transporter ATP-binding protein Regulator
  KX728_RS01835 (KX728_01835) pptB 361330..362379 (+) 1050 WP_215804998.1 ABC transporter permease Regulator
  KX728_RS01840 (KX728_01840) ccrZ 362427..363221 (+) 795 WP_215804997.1 cell cycle regulator CcrZ -
  KX728_RS01845 (KX728_01845) trmB 363218..363853 (+) 636 WP_001266087.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  KX728_RS01850 (KX728_01850) rimP 363980..364459 (+) 480 WP_215804996.1 ribosome maturation factor RimP -
  KX728_RS01855 (KX728_01855) nusA 364502..365638 (+) 1137 WP_049550482.1 transcription termination factor NusA -
  KX728_RS01860 (KX728_01860) rnpM 365660..365953 (+) 294 WP_000857560.1 RNase P modulator RnpM -
  KX728_RS01865 (KX728_01865) - 365946..366245 (+) 300 WP_001041399.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40382.39 Da        Isoelectric Point: 9.9926

>NTDB_id=514602 KX728_RS01835 WP_215804998.1 361330..362379(+) (pptB) [Streptococcus oralis strain 34]
MKDLFLKRKQAFRKECVGYLRYVLNDHFVLFLLVLIGFLAYQYSQLLQHFPENHWPILLFLGIVSALLLAWGGIATYMEV
PDKLFLLVSEEEVKSHLKGQTVRSLVFWLFVQNLFLLLFAPLFLAMGYGLPVFLIYVLLLGTGKYLLFRQKASKFFTDTG
LDWDYVISQESKRKQVLLRFFALFTQVKGVSNSVKRRVYLDFILKAVQKVPSKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLALVFIAQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLEKGEKEKGLKQIVLGVGSAVLLLEFLVGAVVFQE
KIALLALVGASLFLQLFYLPYQLKRLVDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=514602 KX728_RS01835 WP_215804998.1 361330..362379(+) (pptB) [Streptococcus oralis strain 34]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAATGTGTCGGTTATCTTCGTTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTAGTTCTCATCGGTTTTTTAGCCTACCAGTATAGTCAACTCCTGCAACATTTTCCTGAAAATC
ATTGGCCTATTCTCTTGTTTTTGGGGATTGTCTCTGCCTTGCTTTTAGCTTGGGGAGGAATCGCGACCTACATGGAAGTA
CCTGACAAGCTCTTTCTCTTAGTCAGTGAAGAGGAGGTTAAGTCCCACCTCAAAGGGCAGACGGTGCGCTCACTGGTCTT
TTGGCTCTTTGTCCAAAACCTTTTCTTGCTGTTATTTGCGCCCTTATTTTTAGCCATGGGCTATGGTTTGCCAGTCTTTC
TCATCTATGTGCTTTTATTGGGAACTGGGAAATATCTCCTCTTTCGTCAAAAAGCCAGTAAATTTTTTACTGATACTGGT
CTCGACTGGGACTATGTGATCTCCCAAGAAAGCAAGCGCAAGCAAGTTTTGCTTCGTTTCTTTGCTCTCTTTACGCAGGT
CAAGGGCGTTTCAAATAGTGTCAAACGTCGCGTTTATCTGGATTTCATCCTTAAAGCAGTTCAGAAAGTGCCGAGCAAGA
TTTGGCAAAACCTCTATCTTCGTTCTTACCTGCGAAATGGAGACCTCTTTGCCCTCAGTTTGCGCCTTTTGCTCCTATCC
TTGTTAGCTCTAGTCTTTATCGCGCAATCTTGGATCGCGACAGCGGTGGTAGTGCTGTTTAACTACCTCCTGCTCTTTCA
GTTACTGGCCCTCTATCACGCCTTTGACTACCAATACTTGACCCAGCTTTTTCCATTAGAAAAAGGGGAGAAAGAAAAGG
GATTAAAACAGATTGTGCTCGGTGTGGGAAGTGCAGTTCTTTTGTTAGAATTTCTGGTCGGAGCAGTGGTTTTTCAAGAA
AAAATAGCCTTGTTGGCTCTTGTAGGGGCTAGTCTCTTCCTACAATTGTTTTATTTACCTTACCAACTAAAAAGATTGGT
TGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.143

100

0.473

  pptB Streptococcus thermophilus LMD-9

46.286

100

0.464