Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   I6G87_RS00655 Genome accession   NZ_CP065635
Coordinates   123614..124588 (-) Length   324 a.a.
NCBI ID   WP_014613820.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain FDAARGOS_930     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118614..129588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G87_RS00620 (I6G87_00620) gcvT 119188..120279 (-) 1092 WP_015729161.1 glycine cleavage system aminomethyltransferase GcvT -
  I6G87_RS00625 (I6G87_00625) - 120437..120964 (-) 528 WP_014613826.1 shikimate kinase -
  I6G87_RS00630 (I6G87_00630) - 121128..121493 (-) 366 WP_015729162.1 competence type IV pilus minor pilin ComGF -
  I6G87_RS00635 (I6G87_00635) - 121519..121752 (-) 234 WP_014613824.1 hypothetical protein -
  I6G87_RS00640 (I6G87_00640) comGD 121824..122285 (-) 462 WP_234984582.1 competence type IV pilus minor pilin ComGD -
  I6G87_RS00645 (I6G87_00645) comGC 122242..122565 (-) 324 WP_015729165.1 competence type IV pilus major pilin ComGC Machinery gene
  I6G87_RS00650 (I6G87_00650) comGB 122578..123645 (-) 1068 WP_014613821.1 competence type IV pilus assembly protein ComGB -
  I6G87_RS00655 (I6G87_00655) comGA 123614..124588 (-) 975 WP_014613820.1 competence type IV pilus ATPase ComGA Machinery gene
  I6G87_RS00660 (I6G87_00660) - 124749..125378 (-) 630 WP_096535719.1 MBL fold metallo-hydrolase -
  I6G87_RS00665 (I6G87_00665) - 125391..125702 (-) 312 WP_014613818.1 MTH1187 family thiamine-binding protein -
  I6G87_RS00670 (I6G87_00670) - 125703..126689 (-) 987 WP_065520488.1 ROK family glucokinase -
  I6G87_RS00675 (I6G87_00675) - 126686..126889 (-) 204 WP_014613816.1 YqgQ family protein -
  I6G87_RS00680 (I6G87_00680) - 126891..128330 (-) 1440 WP_103263428.1 rhomboid family intramembrane serine protease -
  I6G87_RS00685 (I6G87_00685) - 128349..128888 (-) 540 WP_103263427.1 5-formyltetrahydrofolate cyclo-ligase -
  I6G87_RS00690 (I6G87_00690) rpmG 129040..129204 (-) 165 WP_256726578.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36846.58 Da        Isoelectric Point: 7.5584

>NTDB_id=512348 I6G87_RS00655 WP_014613820.1 123614..124588(-) (comGA) [Staphylococcus pseudintermedius strain FDAARGOS_930]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=512348 I6G87_RS00655 WP_014613820.1 123614..124588(-) (comGA) [Staphylococcus pseudintermedius strain FDAARGOS_930]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCATCAGACATTCATTTTATCCCATCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

58.514

99.691

0.583
  comGA Staphylococcus aureus N315

58.514

99.691

0.583