Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   STR1_RS01630 Genome accession   NZ_CP065486
Coordinates   308530..309219 (+) Length   229 a.a.
NCBI ID   WP_084828484.1    Uniprot ID   A0A0E2Q3Q9
Organism   Streptococcus thermophilus strain R1     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 303530..314219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS01605 - 304495..304665 (+) 171 Protein_276 ascorbate 6-phosphate lactonase -
  STR1_RS01610 (STR1_01615) - 304682..305353 (-) 672 WP_064355629.1 TrkA family potassium uptake protein -
  STR1_RS01615 (STR1_01620) - 305393..306757 (-) 1365 WP_095559235.1 potassium transporter TrkG -
  STR1_RS01620 (STR1_01625) rsmG 306827..307540 (-) 714 WP_002949634.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  STR1_RS01625 (STR1_01630) - 307837..308373 (+) 537 WP_065972912.1 YceD family protein -
  STR1_RS01630 (STR1_01635) covR 308530..309219 (+) 690 WP_084828484.1 response regulator transcription factor Regulator
  STR1_RS01635 (STR1_01640) covS 309216..310733 (+) 1518 WP_084828485.1 HAMP domain-containing histidine kinase Regulator
  STR1_RS01640 (STR1_01645) nrdR 310855..311334 (+) 480 WP_002949642.1 transcriptional regulator NrdR -
  STR1_RS01645 (STR1_01650) - 311331..312506 (+) 1176 WP_095559236.1 DnaD domain protein -
  STR1_RS01650 (STR1_01655) dnaI 312510..313412 (+) 903 WP_014607971.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26683.82 Da        Isoelectric Point: 4.7059

>NTDB_id=510523 STR1_RS01630 WP_084828484.1 308530..309219(+) (covR) [Streptococcus thermophilus strain R1]
MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDIEATKKVPAKASTYRDLKLDVQNRAVVRGDEVIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIRER

Nucleotide


Download         Length: 690 bp        

>NTDB_id=510523 STR1_RS01630 WP_084828484.1 308530..309219(+) (covR) [Streptococcus thermophilus strain R1]
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAGAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCGGACAACGGACGCGAAGGACTTGAAATGGCACTTGAGAAAGATTTCGATCTGATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTCGAAGTGACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCTCGCGACTCAATCATGGATATTGTTGCTGGTTTGGATCGTGGAGCTGATGACTATATTATAAAACCATTTGCGATTGA
AGAACTGTTGGCACGTATTCGTGCAACCTTCCGTCGTCAAGATATCGAAGCTACTAAGAAGGTACCAGCTAAAGCGTCAA
CCTATCGCGATTTAAAATTGGATGTTCAAAACCGTGCAGTTGTTCGCGGTGATGAGGTAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTAAGCAATATGAACCAAGTAATGACCCGTGAGGAACTCTTGCTTCAAGTCTGGAAATA
TGATGACGTAATTGAAACAAACGTTGTAGATGTTTATATTCGTTACTTACGTGGGAAAATCGACATTCCAGGTAAGGAAT
CATACATTCAAACAGTACGAGGGATGGGTTACGTTATCCGTGAAAGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2Q3Q9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

95.633

100

0.956
  covR Lactococcus lactis subsp. lactis strain DGCC12653

67.544

99.563

0.672
  vicR Streptococcus mutans UA159

44.828

100

0.454
  micA Streptococcus pneumoniae Cp1015

42.083

100

0.441