Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ST90729_RS03840 Genome accession   NZ_CP065480
Coordinates   722381..722674 (+) Length   97 a.a.
NCBI ID   WP_087009817.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 717381..727674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS03820 (ST90729_03800) - 718487..719629 (+) 1143 WP_347116776.1 AbiH family protein -
  ST90729_RS03825 (ST90729_03805) - 719795..720502 (+) 708 WP_179971280.1 hypothetical protein -
  ST90729_RS03830 (ST90729_03810) - 720701..721855 (+) 1155 WP_347116778.1 restriction endonuclease subunit S -
  ST90729_RS03835 (ST90729_03815) - 722021..722391 (+) 371 Protein_695 type II toxin-antitoxin system RelE/ParE family toxin -
  ST90729_RS03840 (ST90729_03820) HI0659 722381..722674 (+) 294 WP_087009817.1 helix-turn-helix transcriptional regulator Machinery gene
  ST90729_RS03845 (ST90729_03825) - 722696..724297 (+) 1602 WP_347116780.1 type I restriction-modification system subunit M -
  ST90729_RS03850 - 724415..724860 (+) 446 Protein_698 PD-(D/E)XK nuclease family transposase -
  ST90729_RS03855 (ST90729_03835) - 724892..725893 (+) 1002 WP_347116781.1 DNA/RNA non-specific endonuclease -
  ST90729_RS03860 (ST90729_03840) - 726044..726604 (+) 561 WP_011225762.1 LemA family protein -
  ST90729_RS03865 (ST90729_03845) htpX 726606..727505 (+) 900 WP_347116782.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10758.49 Da        Isoelectric Point: 5.8962

>NTDB_id=510187 ST90729_RS03840 WP_087009817.1 722381..722674(+) (HI0659) [Streptococcus thermophilus strain 90729]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQERV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=510187 ST90729_RS03840 WP_087009817.1 722381..722674(+) (HI0659) [Streptococcus thermophilus strain 90729]
ATGAAGAATAGTGCCATCGGTAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGATACAGTTTTGAAAGTCTTA
GCTAGTCTGGGCAAGACTCTCGCTGTCGTCCCACTGGAACAAGAAAGGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567