Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ST4134_RS08815 Genome accession   NZ_CP065478
Coordinates   1698767..1699723 (-) Length   318 a.a.
NCBI ID   WP_011681684.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4134     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1693767..1704723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4134_RS08780 (ST4134_08755) proC 1694326..1695096 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  ST4134_RS08785 (ST4134_08760) - 1695126..1695788 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  ST4134_RS08790 (ST4134_08765) - 1695885..1696328 (-) 444 WP_011681680.1 hypothetical protein -
  ST4134_RS08795 - 1696402..1696740 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  ST4134_RS08800 - 1696784..1697059 (-) 276 WP_011681681.1 hypothetical protein -
  ST4134_RS08805 (ST4134_08775) - 1697071..1697269 (-) 199 Protein_1677 helix-turn-helix transcriptional regulator -
  ST4134_RS08810 (ST4134_08780) - 1697518..1698711 (-) 1194 WP_014608740.1 acetate kinase -
  ST4134_RS08815 (ST4134_08785) comYH 1698767..1699723 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  ST4134_RS08820 (ST4134_08790) comGG 1699768..1700085 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  ST4134_RS08825 (ST4134_08795) comYF 1700063..1700500 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  ST4134_RS08830 (ST4134_08800) comGE 1700484..1700777 (-) 294 WP_024704238.1 competence type IV pilus minor pilin ComGE -
  ST4134_RS08835 (ST4134_08805) comYD 1700749..1701177 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  ST4134_RS08840 (ST4134_08810) comYC 1701137..1701463 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  ST4134_RS08845 (ST4134_08815) comYB 1701460..1702560 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  ST4134_RS08850 (ST4134_08820) comGA/cglA/cilD 1702442..1703383 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  ST4134_RS08855 (ST4134_08825) - 1703464..1703826 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35843.02 Da        Isoelectric Point: 4.7891

>NTDB_id=510089 ST4134_RS08815 WP_011681684.1 1698767..1699723(-) (comYH) [Streptococcus thermophilus strain 4134]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=510089 ST4134_RS08815 WP_011681684.1 1698767..1699723(-) (comYH) [Streptococcus thermophilus strain 4134]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682