Detailed information NTG0510028

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: ST4078_RS08745
• Genome accession: NZ_CP065477
• Coordinates: 1682849..1683241 (-)
• Length: 130 a.a.
• NCBI ID: WP_014608736.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 4078
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1677849..1688241

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4078_RS08705 (ST4078_08660)	dapD	1678152..1678850 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
ST4078_RS09850 (ST4078_08665)	-	1678936..1679690 (-)	755	Protein_1662	HAD family hydrolase	-
ST4078_RS08725 (ST4078_08670)	-	1679805..1680638 (-)	834	WP_014608733.1	putative RNA methyltransferase	-
ST4078_RS08735 (ST4078_08680)	-	1681007..1681174 (+)	168	WP_002945733.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
ST4078_RS09855	-	1681227..1681490 (+)	264	WP_014608734.1	hypothetical protein	-
ST4078_RS08740 (ST4078_08685)	tadA	1681571..1682089 (-)	519	WP_014608735.1	tRNA adenosine(34) deaminase TadA	-
ST4078_RS08745 (ST4078_08690)	ssbA	1682849..1683241 (-)	393	WP_014608736.1	single-stranded DNA-binding protein	Machinery gene
ST4078_RS08750 (ST4078_08695)	-	1683447..1683674 (-)	228	WP_014608737.1	sulfurtransferase TusA family protein	-
ST4078_RS08755 (ST4078_08700)	-	1683689..1684720 (-)	1032	WP_014608738.1	YeeE/YedE family protein	-
ST4078_RS08760 (ST4078_08705)	ytpR	1684858..1685481 (-)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
ST4078_RS08765 (ST4078_08710)	-	1685491..1685805 (-)	315	WP_011226613.1	thioredoxin family protein	-
ST4078_RS08770 (ST4078_08715)	-	1685802..1686086 (-)	285	WP_011681678.1	DUF4651 domain-containing protein	-
ST4078_RS08775 (ST4078_08720)	pepA	1686186..1687253 (+)	1068	WP_002952022.1	glutamyl aminopeptidase	-
ST4078_RS08780 (ST4078_08725)	proC	1687269..1688039 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14803.78 Da
• Isoelectric Point: 5.9275

>NTDB_id=510028 ST4078_RS08745 WP_014608736.1 1682849..1683241(-) (ssbA) [Streptococcus thermophilus strain 4078]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKMQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=510028 ST4078_RS08745 WP_014608736.1 1682849..1683241(-) (ssbA) [Streptococcus thermophilus strain 4078]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGATGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	79.389	100	0.8
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377