Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KU506_RS00675 Genome accession   NZ_CP077868
Coordinates   164476..165588 (-) Length   370 a.a.
NCBI ID   WP_000775117.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 366     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 159476..170588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU506_RS00665 (KU506_00665) gyrA 159955..162495 (-) 2541 WP_225805698.1 DNA gyrase subunit A -
  KU506_RS00670 (KU506_00670) gyrB 162532..164466 (-) 1935 WP_000255586.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  KU506_RS00675 (KU506_00675) recF 164476..165588 (-) 1113 WP_000775117.1 DNA replication/repair protein RecF Machinery gene
  KU506_RS00680 (KU506_00680) yaaA 165585..165830 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  KU506_RS00685 (KU506_00685) dnaN 166211..167344 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  KU506_RS00690 (KU506_00690) dnaA 167622..168983 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  KU506_RS00695 (KU506_00695) rpmH 169714..169851 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  KU506_RS00700 (KU506_00700) rnpA 169972..170325 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42431.43 Da        Isoelectric Point: 6.4359

>NTDB_id=509199 KU506_RS00675 WP_000775117.1 164476..165588(-) (recF) [Staphylococcus aureus strain 366]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYTQNEAAR
LEDIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=509199 KU506_RS00675 WP_000775117.1 164476..165588(-) (recF) [Staphylococcus aureus strain 366]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGACTAACCCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATACTCAAAATGAAGCGGCACGA
CTTGAAGATATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTATATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

48.525

100

0.489