Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   I5043_RS07120 Genome accession   NZ_CP065353
Coordinates   1523120..1524094 (-) Length   324 a.a.
NCBI ID   WP_196931707.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR39_O1_merpol     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1518120..1529094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5043_RS07080 (I5043_07080) gcvT 1518622..1519713 (-) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  I5043_RS07085 (I5043_07085) - 1519871..1520395 (-) 525 WP_001015120.1 shikimate kinase -
  I5043_RS07090 (I5043_07090) - 1520385..1520531 (-) 147 WP_001789879.1 hypothetical protein -
  I5043_RS07095 (I5043_07095) comGF 1520628..1521125 (-) 498 WP_078061106.1 competence type IV pilus minor pilin ComGF Machinery gene
  I5043_RS07100 (I5043_07100) comGE 1521043..1521342 (-) 300 WP_000844409.1 hypothetical protein Machinery gene
  I5043_RS07105 (I5043_07105) comGD 1521329..1521775 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  I5043_RS07110 (I5043_07110) comGC 1521753..1522064 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  I5043_RS07115 (I5043_07115) comGB 1522078..1523148 (-) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  I5043_RS07120 (I5043_07120) comGA 1523120..1524094 (-) 975 WP_196931707.1 competence type IV pilus ATPase ComGA Machinery gene
  I5043_RS07125 (I5043_07125) - 1524146..1524769 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  I5043_RS07130 (I5043_07130) - 1524766..1525095 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  I5043_RS07135 (I5043_07135) - 1525095..1526081 (-) 987 WP_000161315.1 ROK family glucokinase -
  I5043_RS07140 (I5043_07140) - 1526078..1526281 (-) 204 WP_000087561.1 YqgQ family protein -
  I5043_RS07145 (I5043_07145) - 1526262..1527725 (-) 1464 WP_001017867.1 rhomboid family protein -
  I5043_RS07150 (I5043_07150) - 1527737..1528276 (-) 540 WP_000164552.1 5-formyltetrahydrofolate cyclo-ligase -
  I5043_RS07155 (I5043_07155) rpmG 1528485..1528634 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36898.90 Da        Isoelectric Point: 8.4460

>NTDB_id=508707 I5043_RS07120 WP_196931707.1 1523120..1524094(-) (comGA) [Staphylococcus aureus strain AR39_O1_merpol]
MKILFQEIINEAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=508707 I5043_RS07120 WP_196931707.1 1523120..1524094(-) (comGA) [Staphylococcus aureus strain AR39_O1_merpol]
TTGAAGATTCTATTTCAAGAAATAATTAATGAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTAATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCTACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAAGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997