Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   I0292_RS08895 Genome accession   NZ_CP065335
Coordinates   1716197..1716637 (-) Length   146 a.a.
NCBI ID   WP_028414988.1    Uniprot ID   A0AAX6BNS1
Organism   Priestia megaterium strain Y11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1711197..1721637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0292_RS08870 (I0292_08830) - 1711330..1711845 (+) 516 WP_028414992.1 enoyl-CoA hydratase/isomerase family protein -
  I0292_RS08875 - 1711986..1712111 (+) 126 WP_014458690.1 hypothetical protein -
  I0292_RS08880 (I0292_08835) helD 1712355..1714673 (+) 2319 WP_028414991.1 RNA polymerase recycling motor HelD -
  I0292_RS08885 (I0292_08840) - 1715062..1715652 (+) 591 WP_028414990.1 CPBP family intramembrane glutamic endopeptidase -
  I0292_RS08890 (I0292_08845) comJ 1715754..1716161 (-) 408 WP_098113593.1 competence protein ComJ -
  I0292_RS08895 (I0292_08850) nucA/comI 1716197..1716637 (-) 441 WP_028414988.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  I0292_RS08900 (I0292_08855) - 1717016..1717276 (+) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  I0292_RS08905 (I0292_08860) - 1717433..1719382 (+) 1950 WP_028414987.1 FUSC family protein -
  I0292_RS08910 (I0292_08865) - 1719418..1720236 (-) 819 WP_028414986.1 squalene/phytoene synthase family protein -
  I0292_RS08915 (I0292_08870) - 1720562..1721233 (+) 672 WP_028414985.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16034.86 Da        Isoelectric Point: 4.4411

>NTDB_id=508539 I0292_RS08895 WP_028414988.1 1716197..1716637(-) (nucA/comI) [Priestia megaterium strain Y11]
MSTYGKKLMASLFIIIACVLGFIGHAAFLAPEKTEAEANYDATLYFPLDRYPETGDHIRDAITAGHSSVCTIDRDGAEAN
REESLKGYPTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 441 bp        

>NTDB_id=508539 I0292_RS08895 WP_028414988.1 1716197..1716637(-) (nucA/comI) [Priestia megaterium strain Y11]
ATGAGTACATACGGGAAAAAATTAATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCGGC
GTTTTTAGCTCCTGAAAAAACGGAAGCCGAAGCAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAA
CCGGCGATCATATTCGCGACGCAATTACTGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGATGGTGCTGAAGCAAAC
CGAGAAGAATCGCTGAAAGGATACCCAACAAAAACAGGATATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGG
CGGAGCAGGAGCTGATATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAAC
AGTACCCAGATGGTACACGCGTACAATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

86.301

0.562