Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I3U24_RS16820 Genome accession   NZ_CP065167
Coordinates   3382202..3382798 (-) Length   198 a.a.
NCBI ID   WP_032429924.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain KPN114     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3377202..3387798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3U24_RS16805 (I3U24_16805) helD 3377410..3379464 (-) 2055 WP_004176653.1 DNA helicase IV -
  I3U24_RS16810 (I3U24_16810) - 3379589..3380035 (+) 447 WP_002898425.1 YccF domain-containing protein -
  I3U24_RS16815 (I3U24_16815) yccS 3380053..3382188 (+) 2136 WP_002898422.1 YccS family putative transporter -
  I3U24_RS16820 (I3U24_16820) sxy/tfoX 3382202..3382798 (-) 597 WP_032429924.1 TfoX/Sxy family DNA transformation protein Regulator
  I3U24_RS16825 (I3U24_16825) sulA 3383147..3383656 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  I3U24_RS16830 (I3U24_16830) ompA 3384009..3385079 (+) 1071 WP_002898408.1 porin OmpA -
  I3U24_RS16835 (I3U24_16835) matP 3385211..3385663 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  I3U24_RS16840 (I3U24_16840) - 3385849..3387606 (+) 1758 WP_032429922.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22590.18 Da        Isoelectric Point: 10.1298

>NTDB_id=507651 I3U24_RS16820 WP_032429924.1 3382202..3382798(-) (sxy/tfoX) [Klebsiella pneumoniae strain KPN114]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAAVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=507651 I3U24_RS16820 WP_032429924.1 3382202..3382798(-) (sxy/tfoX) [Klebsiella pneumoniae strain KPN114]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGCGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505