Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   I2435_RS02335 Genome accession   NZ_CP065059
Coordinates   448199..449521 (+) Length   440 a.a.
NCBI ID   WP_165627613.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ25     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443199..454521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2435_RS02310 (JFMEOBDD_00462) - 443606..444247 (+) 642 WP_041785672.1 response regulator transcription factor -
  I2435_RS02315 (JFMEOBDD_00463) - 444280..445680 (+) 1401 WP_042671181.1 Cof-type HAD-IIB family hydrolase -
  I2435_RS02320 (JFMEOBDD_00464) - 445680..446045 (+) 366 WP_042671180.1 S1 RNA-binding domain-containing protein -
  I2435_RS02325 (JFMEOBDD_00465) cysK 446455..447381 (-) 927 WP_042671179.1 cysteine synthase A -
  I2435_RS02330 (JFMEOBDD_00466) - 447502..448143 (-) 642 WP_042671178.1 YigZ family protein -
  I2435_RS02335 (JFMEOBDD_00467) comFA/cflA 448199..449521 (+) 1323 WP_165627613.1 DEAD/DEAH box helicase Machinery gene
  I2435_RS02340 (JFMEOBDD_00468) - 449496..450161 (+) 666 WP_165627612.1 ComF family protein -
  I2435_RS02345 (JFMEOBDD_00469) raiA 450237..450785 (+) 549 WP_012679953.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 49840.99 Da        Isoelectric Point: 9.7600

>NTDB_id=506479 I2435_RS02335 WP_165627613.1 448199..449521(+) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
MENIENYYGRLLPEGQCPKAVSVWACSLQSMIAKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
ASFPKGHYLRWQGQLTTYQAAISHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVNKGGWVCIASPRVDVCIELEKR
LSRDFSCQICLMHAESEAYHRSPIIIATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
KDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAINRGKLPRRFITLVKKQRATGYPLLIFFPLIELAEQCCQL
LQKYFPKETIAHASSQSSNRMTIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQISGRVGRSLAR
PEGQVLFFHDGISKAMLKAVREIKDMNQKGYQNELSTLSQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=506479 I2435_RS02335 WP_165627613.1 448199..449521(+) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAGGGCAATGCCCAAAGGCTGTTTCTGTCTGGGCTTGCAG
CTTACAAAGCATGATCGCTAAAAAAGGAACATTATACTGCCAACGCTGTAGCAGCTTAATTGAGAAAGCTCATCAGCTAC
CTAGCGGTGCTTACTATTGTAGAGCCTGTCTCGTTTTTGGTCGAAACCAATCTGATCGCCCCTTGCTCTATTTTCCACCG
GCTTCTTTTCCAAAGGGACATTATCTGAGGTGGCAAGGACAGCTCACGACATATCAGGCAGCTATCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACCTTAGTTCATGCGGTTACTGGTGCTGGCAAAACAGAGATGATGTATGAAGCTA
TTGCAGCAGTTGTTAATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTTTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCCTGTCAAATCTGCCTTATGCATGCTGAGTCAGAGGCTTATCATAGAAGTCCCATAATCATTGC
CACAACACATCAATTGATGACCTTTTACCATGCTTTTGATCTGCTCATTATTGACGAAGTAGATGCCTTTCCCTTTGTCA
ATAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AAAGACTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACATTGGCAAGAAGATTTCATGGCAAGCCCTTAGT
TGTTCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCAATCGCGGGAAATTGCCTAGAAGGTTCATCACCCTAG
TCAAAAAACAAAGGGCAACTGGCTATCCTCTCTTAATCTTTTTTCCGCTTATTGAGCTGGCTGAGCAATGCTGTCAGCTG
CTCCAAAAGTATTTTCCTAAGGAAACTATTGCCCATGCTTCTAGTCAGTCATCAAATCGAATGACTATCATTGAGCAATT
TAGACAAGGACAAATCACTATACTCATATCAACAACCATTTTAGAAAGAGGTGTGACCTTTCCGACCGTAGATGTCTTTG
TCTTGTTAGCCAATCATCGTCTTTACACAAGCAGCAGTCTGATTCAGATTTCAGGTCGCGTCGGGCGTTCCTTGGCAAGG
CCTGAAGGACAGGTGCTGTTTTTTCATGATGGCATTAGCAAGGCCATGCTCAAGGCAGTGCGGGAGATAAAGGACATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGTCACAATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(101-244)

Helicase conserved C-terminal domain (Helicase_C)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae R6

52.706

96.591

0.509
  comFA/cflA Streptococcus pneumoniae Rx1

52.706

96.591

0.509
  comFA/cflA Streptococcus pneumoniae D39

52.706

96.591

0.509
  comFA/cflA Streptococcus pneumoniae TIGR4

52.706

96.591

0.509
  comFA/cflA Streptococcus mitis SK321

52.706

96.591

0.509
  comFA/cflA Streptococcus mitis NCTC 12261

52.471

96.591

0.507
  comFA Lactococcus lactis subsp. cremoris KW2

48.469

89.091

0.432