Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I2432_RS02045 Genome accession   NZ_CP065054
Coordinates   401810..402298 (+) Length   162 a.a.
NCBI ID   WP_038674547.1    Uniprot ID   A0A380JNM1
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 396810..407298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2432_RS10275 - 397263..397679 (-) 417 WP_249093331.1 LPXTG cell wall anchor domain-containing protein -
  I2432_RS10280 - 397799..398185 (-) 387 WP_249093334.1 hypothetical protein -
  I2432_RS02030 (LJFMMFNO_00405) - 398403..398687 (-) 285 WP_115250599.1 hypothetical protein -
  I2432_RS02035 (LJFMMFNO_00406) mutY 398976..400124 (-) 1149 WP_115250600.1 A/G-specific adenine glycosylase -
  I2432_RS02040 (LJFMMFNO_00407) rpsF 401501..401791 (+) 291 WP_012678504.1 30S ribosomal protein S6 -
  I2432_RS02045 (LJFMMFNO_00408) ssbA 401810..402298 (+) 489 WP_038674547.1 single-stranded DNA-binding protein Machinery gene
  I2432_RS02050 (LJFMMFNO_00409) rpsR 402457..402696 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  I2432_RS02055 (LJFMMFNO_00410) - 402963..403613 (-) 651 WP_111689846.1 DUF1129 domain-containing protein -
  I2432_RS02060 (LJFMMFNO_00411) - 403868..404812 (-) 945 WP_014622324.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17822.66 Da        Isoelectric Point: 4.9008

>NTDB_id=506289 I2432_RS02045 WP_038674547.1 401810..402298(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=506289 I2432_RS02045 WP_038674547.1 401810..402298(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JNM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377