Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IXK98_RS08890 Genome accession   NZ_CP064858
Coordinates   70610..71728 (+) Length   372 a.a.
NCBI ID   WP_195877309.1    Uniprot ID   -
Organism   Vibrio europaeus strain 07/118 T2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 65610..76728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS08870 (IXK98_08870) rsmB 66554..67834 (-) 1281 WP_171383536.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IXK98_RS08875 (IXK98_08875) fmt 67908..68855 (-) 948 WP_171383537.1 methionyl-tRNA formyltransferase -
  IXK98_RS08880 (IXK98_08880) def 68883..69404 (-) 522 WP_004743629.1 peptide deformylase -
  IXK98_RS08885 (IXK98_08885) - 69581..70606 (+) 1026 WP_195877308.1 LysM peptidoglycan-binding domain-containing protein -
  IXK98_RS08890 (IXK98_08890) dprA 70610..71728 (+) 1119 WP_195877309.1 DNA-processing protein DprA Machinery gene
  IXK98_RS08895 (IXK98_08895) - 71731..72210 (+) 480 WP_171383540.1 DUF494 family protein -
  IXK98_RS08900 (IXK98_08900) - 72226..72810 (+) 585 WP_195877310.1 type I DNA topoisomerase -
  IXK98_RS08905 (IXK98_08905) - 72857..73990 (-) 1134 WP_195877311.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IXK98_RS08910 (IXK98_08910) purE 73994..74479 (-) 486 WP_069668053.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IXK98_RS08915 (IXK98_08915) - 74674..75231 (+) 558 WP_195877312.1 L-threonylcarbamoyladenylate synthase -
  IXK98_RS08920 (IXK98_08920) hemF 75253..76170 (+) 918 WP_195877313.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40149.93 Da        Isoelectric Point: 6.1019

>NTDB_id=505372 IXK98_RS08890 WP_195877309.1 70610..71728(+) (dprA) [Vibrio europaeus strain 07/118 T2]
MTNEELAAWLSLNFTPRVGPKTFSRLLAIDSPLNIVQSELPALLALGLSTQQVNYLKNRVAKEVEQCFEWQQQSAQHNII
TKQESTYPALLEQAVGSPPVLFVQGDLSCLSEPQIAMVGSRNASPEGLNTARSFARALVERGLTVTSGLALGVDGYAHDG
ALQGGGHTLAVLGSGLETIYPARHRELARRILDSGGALVSEFHPKAKPKADHFPRRNRIISGLSVGVLVVEAAEKSGSLI
TARYAIEQGRDVFAIPGSIHDSNASGCNLLIKQGACLVMQVQDIVDEIETLLRWSNSSKPPIQNELFEEIDSKEELPFPL
LLANVGSKAIPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=505372 IXK98_RS08890 WP_195877309.1 70610..71728(+) (dprA) [Vibrio europaeus strain 07/118 T2]
GTGACCAATGAAGAGCTCGCGGCATGGCTGTCGCTCAACTTTACCCCTAGAGTCGGTCCGAAAACCTTTTCTCGCCTGCT
CGCAATAGACTCACCACTCAACATTGTTCAATCTGAACTTCCGGCGCTTTTAGCACTTGGATTAAGCACACAACAGGTTA
ACTATCTAAAAAACCGTGTGGCGAAAGAGGTTGAGCAGTGCTTTGAGTGGCAACAACAATCTGCTCAACACAATATCATT
ACTAAGCAAGAGAGTACTTACCCGGCGTTACTTGAACAGGCGGTAGGCTCTCCTCCGGTTTTATTCGTTCAAGGAGATTT
GAGTTGTTTATCTGAACCTCAAATTGCGATGGTCGGTAGTCGCAATGCCAGTCCAGAAGGGCTTAATACCGCGCGAAGCT
TTGCTCGGGCTTTGGTTGAGCGAGGCCTGACAGTCACAAGTGGTTTGGCCCTTGGCGTGGATGGCTATGCTCATGATGGA
GCGCTGCAAGGGGGAGGACATACACTCGCGGTTCTCGGTAGCGGTCTAGAAACTATTTACCCTGCTAGACATCGTGAACT
TGCTAGGAGAATTCTTGATAGTGGAGGGGCGCTTGTTTCGGAGTTTCACCCCAAAGCGAAGCCTAAAGCCGATCATTTTC
CGCGCCGCAATCGAATTATCAGTGGCCTTTCTGTTGGAGTGCTGGTGGTTGAAGCCGCAGAGAAAAGTGGCTCCTTGATT
ACGGCGCGCTATGCCATAGAGCAAGGGCGTGACGTGTTTGCTATTCCGGGCTCTATCCACGATTCCAATGCTAGCGGCTG
TAACCTGTTGATTAAGCAAGGTGCGTGCTTGGTGATGCAAGTTCAGGACATAGTTGATGAAATAGAGACGCTTTTACGCT
GGTCTAATTCCAGTAAGCCACCGATTCAGAATGAACTTTTCGAAGAAATAGATAGTAAAGAAGAATTGCCATTTCCTCTG
CTGTTAGCTAACGTAGGAAGTAAGGCTATACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTGCAGGACGTCAT
GATGCAGCTCTTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)

DprA winged helix domain (DprA_WH)

(321-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.873

99.194

0.624
  dprA Vibrio cholerae strain A1552

59.14

100

0.591
  dprA Glaesserella parasuis strain SC1401

42.819

100

0.433
  dprA Legionella pneumophila strain ERS1305867

44.444

96.774

0.43
  dprA Neisseria meningitidis MC58

36.935

100

0.395
  dprA Neisseria meningitidis strain C311

36.935

100

0.395
  dprA Haemophilus influenzae Rd KW20

42

94.086

0.395
  dprA Neisseria gonorrhoeae MS11

35.961

100

0.392
  dprA Neisseria gonorrhoeae strain FA1090

35.714

100

0.39