Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   KQ252_RS07330 Genome accession   NZ_CP076801
Coordinates   1538827..1539342 (+) Length   171 a.a.
NCBI ID   WP_045900321.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC25604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1533827..1544342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS07310 (KQ252_07295) - 1534157..1535617 (+) 1461 WP_002133917.1 amino acid permease -
  KQ252_RS07315 (KQ252_07300) - 1535894..1537099 (+) 1206 WP_045900322.1 RtcB family protein -
  KQ252_RS07320 (KQ252_07305) - 1537103..1537261 (+) 159 WP_000692859.1 hypothetical protein -
  KQ252_RS07325 (KQ252_07310) omp38 1537386..1538447 (-) 1062 WP_000777885.1 outer membrane protein Omp38 -
  KQ252_RS07330 (KQ252_07315) fimT 1538827..1539342 (+) 516 WP_045900321.1 GspH/FimT family pseudopilin Machinery gene
  KQ252_RS07335 (KQ252_07320) - 1539451..1540626 (+) 1176 WP_000129968.1 thiolase family protein -
  KQ252_RS07340 (KQ252_07325) - 1540753..1541196 (+) 444 WP_045900320.1 VOC family protein -
  KQ252_RS07345 (KQ252_07330) - 1541239..1541592 (-) 354 WP_000457783.1 multidrug efflux SMR transporter -
  KQ252_RS07350 (KQ252_07335) - 1541675..1542160 (-) 486 WP_000935250.1 DUF934 domain-containing protein -
  KQ252_RS07355 (KQ252_07340) - 1542153..1543796 (-) 1644 WP_000281764.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19508.71 Da        Isoelectric Point: 9.1498

>NTDB_id=504753 KQ252_RS07330 WP_045900321.1 1538827..1539342(+) (fimT) [Acinetobacter baumannii strain UC25604]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDATIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNVQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEGLKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=504753 KQ252_RS07330 WP_045900321.1 1538827..1539342(+) (fimT) [Acinetobacter baumannii strain UC25604]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAACTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATGTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGTCATGTACGCTTAGAAGGGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427