Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   KP952_RS16015 Genome accession   NZ_CP076731
Coordinates   3017532..3018395 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3012532..3023395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS15980 (KP952_15980) mrpE 3012700..3013176 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KP952_RS15985 (KP952_15985) mrpF 3013176..3013460 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KP952_RS15990 (KP952_15990) mnhG 3013444..3013818 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  KP952_RS15995 (KP952_15995) yuxO 3013857..3014237 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  KP952_RS16000 (KP952_16000) comA 3014256..3014900 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KP952_RS16005 (KP952_16005) comP 3014981..3017293 (-) 2313 WP_103330147.1 sensor histidine kinase Regulator
  KP952_RS16010 (KP952_16010) comX 3017309..3017530 (-) 222 WP_014480704.1 competence pheromone ComX -
  KP952_RS16015 (KP952_16015) comQ 3017532..3018395 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  KP952_RS16020 (KP952_16020) degQ 3018580..3018720 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KP952_RS16025 (KP952_16025) - 3018942..3019067 (+) 126 WP_003228793.1 hypothetical protein -
  KP952_RS16030 (KP952_16030) - 3019182..3019550 (+) 369 WP_046381300.1 hypothetical protein -
  KP952_RS16035 (KP952_16035) pdeH 3019526..3020755 (-) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -
  KP952_RS16040 (KP952_16040) pncB 3020891..3022363 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  KP952_RS16045 (KP952_16045) pncA 3022379..3022930 (-) 552 WP_014480709.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=504472 KP952_RS16015 WP_014480705.1 3017532..3018395(-) (comQ) [Bacillus subtilis subsp. subtilis strain Miz-8]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=504472 KP952_RS16015 WP_014480705.1 3017532..3018395(-) (comQ) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439