Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KPA27_RS02040 Genome accession   NZ_CP076517
Coordinates   402313..402930 (-) Length   205 a.a.
NCBI ID   WP_202847620.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 397313..407930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS02020 (KPA27_02020) - 397984..398817 (+) 834 WP_014637516.1 energy-coupling factor transporter transmembrane component T -
  KPA27_RS02025 (KPA27_02025) - 398977..399180 (+) 204 WP_014637517.1 cold-shock protein -
  KPA27_RS02030 (KPA27_02030) rsmG 399371..400084 (-) 714 WP_014637518.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KPA27_RS02035 (KPA27_02035) pbp1a 400143..402332 (-) 2190 WP_014637519.1 penicillin-binding protein PBP1A -
  KPA27_RS02040 (KPA27_02040) recU 402313..402930 (-) 618 WP_202847620.1 Holliday junction resolvase RecU Machinery gene
  KPA27_RS02045 (KPA27_02045) - 402996..403535 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  KPA27_RS02050 (KPA27_02050) gpsB 403606..403941 (+) 336 WP_004194167.1 cell division regulator GpsB -
  KPA27_RS02060 (KPA27_02060) - 404498..405664 (+) 1167 WP_024400110.1 class I SAM-dependent RNA methyltransferase -
  KPA27_RS02065 (KPA27_02065) - 405674..407128 (+) 1455 WP_202847621.1 cell division site-positioning protein MapZ family protein -
  KPA27_RS02070 (KPA27_02070) - 407349..407831 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23835.43 Da        Isoelectric Point: 9.9440

>NTDB_id=503138 KPA27_RS02040 WP_202847620.1 402313..402930(-) (recU) [Streptococcus suis strain 39565]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKTSMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=503138 KPA27_RS02040 WP_202847620.1 402313..402930(-) (recU) [Streptococcus suis strain 39565]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAACATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATCGAACACATGAAACAGGTTGTTAAACAAGGTGGCATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.246

97.073

0.478