Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ26_RS21915 Genome accession   NZ_CP064094
Coordinates   4167969..4168247 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain N1108-5at     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4162969..4173247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS21895 ade 4163028..4164761 (-) 1734 WP_003245362.1 adenine deaminase -
  IRJ26_RS21900 ktrC 4164916..4165581 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  IRJ26_RS21905 ykqA 4165644..4166477 (-) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  IRJ26_RS21910 kinC 4166493..4167779 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  IRJ26_RS21915 abrB 4167969..4168247 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  IRJ26_RS21920 mreBH 4168531..4169538 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  IRJ26_RS21925 ykpC 4169639..4169773 (+) 135 WP_003238865.1 protein YkpC -
  IRJ26_RS21930 ampS 4169883..4171115 (+) 1233 WP_003232341.1 aminopeptidase -
  IRJ26_RS21935 - 4171149..4172060 (-) 912 WP_003245639.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=499350 IRJ26_RS21915 WP_003244728.1 4167969..4168247(-) (abrB) [Bacillus subtilis strain N1108-5at]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=499350 IRJ26_RS21915 WP_003244728.1 4167969..4168247(-) (abrB) [Bacillus subtilis strain N1108-5at]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576