Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IRJ17_RS16495 Genome accession   NZ_CP064090
Coordinates   3431617..3432675 (+) Length   352 a.a.
NCBI ID   WP_122965256.1    Uniprot ID   -
Organism   Brevibacillus parabrevis strain B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3426617..3437675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ17_RS16480 pgsA 3427925..3428500 (+) 576 WP_063227562.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IRJ17_RS16485 cinA 3428609..3429853 (+) 1245 WP_122965254.1 competence/damage-inducible protein A Machinery gene
  IRJ17_RS16490 - 3429861..3431450 (+) 1590 WP_122965255.1 DEAD/DEAH box helicase -
  IRJ17_RS16495 recA 3431617..3432675 (+) 1059 WP_122965256.1 recombinase RecA Machinery gene
  IRJ17_RS16500 - 3432793..3433440 (+) 648 WP_173598865.1 RecX family transcriptional regulator -
  IRJ17_RS16505 rny 3433718..3435259 (+) 1542 WP_242771115.1 ribonuclease Y -
  IRJ17_RS16510 - 3435333..3436127 (+) 795 WP_122965259.1 TIGR00282 family metallophosphoesterase -
  IRJ17_RS16515 spoVS 3436246..3436506 (+) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  IRJ17_RS16520 - 3436600..3437538 (+) 939 WP_242771117.1 dipeptidase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37778.04 Da        Isoelectric Point: 4.9005

>NTDB_id=499020 IRJ17_RS16495 WP_122965256.1 3431617..3432675(+) (recA) [Brevibacillus parabrevis strain B3]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNVQISTVSSGALALDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKVFLKENPHIASQIETK
VREYFSLNPGSVPEAEPVVDPEQDEEPAFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=499020 IRJ17_RS16495 WP_122965256.1 3431617..3432675(+) (recA) [Brevibacillus parabrevis strain B3]
TTGTCAGATCGTCGCGCAGCTTTGGAGAGTGCATTGCGTCAAATAGAAAAGCAGTTCGGAAAAGGTTCCATCATGAAGTT
GGGAGAGGTGTCCAACGTTCAGATTTCGACCGTTTCCAGTGGTGCGTTAGCGTTGGATATCGCATTGGGTGTAGGTGGAT
TCCCACGTGGCCGTATCGTCGAGATTTATGGTCCTGAGTCTTCCGGTAAAACAACCGTAGCGCTCCATGCAATCGCAGAA
GTACAACGTCAAGGTGGACAAGCGGCTTTCATCGACGCCGAGCATGCACTGGACCCTGTCTATGCAGCGAAGCTGGGCGT
GAACATCGATGAGTTGCTGCTTTCCCAGCCGGATACAGGGGAGCAAGCATTGGAAATTGCCGAAGCGCTGGTGCGCTCCG
GTGCAGTAGATATCATCGTAGTGGACTCTGTAGCAGCACTGGTTCCAAAAGCAGAGATTGAAGGCGAGATGGGAGATTCC
CACGTAGGTTTGCAAGCCCGCCTGATGTCGCAAGCTTTGCGCAAACTGTCCGGTGCGATCAACAAGTCCAAGACAATCGC
GATCTTCATCAACCAGCTGCGTGAAAAAGTAGGCGTGATGTTCGGTAACCCAGAGACAACTCCAGGTGGACGCGCTCTGA
AATTCTACGCCAGCGTGCGTCTGGATGTTCGTAAAGCAGAATCGATCAAAGTCGGTAACGACATCCTTGGCAGCAAGACC
AAGATCAAAGTCGTGAAAAACAAAGTAGCGCCACCGTTCAAAGTCGCTGAAGTGGACATCATGTACGGGGAAGGGATCTC
CAAAGAGGGCAGCATCCTCGATATCGGTTCCGAAATCGATGTGGTACAAAAAAGTGGTGCTTGGTACTCCTTCAACGAGG
AGCGCCTCGGCCAAGGACGGGAAAACTCGAAAGTCTTCCTCAAAGAAAACCCGCATATTGCTTCCCAAATCGAGACAAAG
GTTCGCGAGTATTTCAGCCTCAATCCAGGCTCTGTTCCTGAAGCAGAACCAGTCGTCGATCCTGAGCAAGACGAAGAGCC
AGCATTTGACCTTGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.928

94.318

0.773
  recA Latilactobacillus sakei subsp. sakei 23K

70.76

97.159

0.687
  recA Streptococcus pyogenes NZ131

66.667

100

0.67
  recA Streptococcus mitis NCTC 12261

66.572

100

0.668
  recA Streptococcus mutans UA159

65.254

100

0.656
  recA Streptococcus pneumoniae D39

69.369

94.602

0.656
  recA Streptococcus pneumoniae Rx1

69.369

94.602

0.656
  recA Streptococcus pneumoniae R6

69.369

94.602

0.656
  recA Streptococcus pneumoniae TIGR4

69.369

94.602

0.656
  recA Streptococcus mitis SK321

69.069

94.602

0.653
  recA Lactococcus lactis subsp. cremoris KW2

68.788

93.75

0.645
  recA Ralstonia pseudosolanacearum GMI1000

67.077

92.33

0.619
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae strain FA1090

62.717

98.295

0.616
  recA Vibrio cholerae strain A1552

65.443

92.898

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.443

92.898

0.608
  recA Glaesserella parasuis strain SC1401

63.855

94.318

0.602
  recA Acinetobacter baumannii D1279779

60.571

99.432

0.602
  recA Acinetobacter baylyi ADP1

60.632

98.864

0.599
  recA Pseudomonas stutzeri DSM 10701

60.641

97.443

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

92.898

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.928

91.193

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.909

0.565
  recA Helicobacter pylori 26695

59.639

94.318

0.563
  recA Helicobacter pylori strain NCTC11637

59.337

94.318

0.56