Detailed information    

insolico Bioinformatically predicted

Overview

Name   pknB   Type   Regulator
Locus tag   KIK01_RS03975 Genome accession   NZ_CP075489
Coordinates   776399..778282 (+) Length   627 a.a.
NCBI ID   WP_099960271.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context

Location: 771399..783282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS03960 (KIK01_03960) fmt 773345..774301 (+) 957 WP_099947313.1 methionyl-tRNA formyltransferase -
  KIK01_RS03965 (KIK01_03965) rsmB 774291..775634 (+) 1344 WP_016264863.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  KIK01_RS03970 (KIK01_03970) - 775656..776402 (+) 747 WP_016264864.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  KIK01_RS03975 (KIK01_03975) pknB 776399..778282 (+) 1884 WP_099960271.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  KIK01_RS03980 (KIK01_03980) rsgA 778382..779281 (+) 900 WP_011374402.1 ribosome small subunit-dependent GTPase A -
  KIK01_RS03985 (KIK01_03985) rpe 779305..779967 (+) 663 WP_076647402.1 ribulose-phosphate 3-epimerase -
  KIK01_RS03990 (KIK01_03990) - 779954..780604 (+) 651 WP_016264867.1 thiamine diphosphokinase -
  KIK01_RS03995 (KIK01_03995) rpmB 780954..781139 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  KIK01_RS04000 (KIK01_04000) - 781442..781804 (+) 363 WP_016264868.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68214.83 Da        Isoelectric Point: 5.9848

>NTDB_id=498693 KIK01_RS03975 WP_099960271.1 776399..778282(+) (pknB) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MMETGYAVAGRYKIIRPIGEGGMANVYLAQDLILDRQVAVKVLRLDLRNDPDTVRRFTREALATTELNHPNIVSIYDVGE
ENSMQYIIMEYIKGTDLKKYIVEHFPIPYQRVIDIMTQILSAVQNAHAHNIIHRDLKPQNILVDEDGNVKISDFGIAIAL
SETAMTQTNTLLGSVHYLSPEQARGSMATKRSDIYSLGIVLYELLTGMVPFEGESAVSIAIKHFQDEVPPVRNYDPRIPQ
ALENVVLKATAKDPDERYSGVDAMMADLATSLSASRAHEPKFVPSKADDLSETKVIPALDPEGITQTNNDEEQVKEAEPT
QKKVKKPAKSKRKWWLLGGGVVLLLLLATVIAFAVQGSEVTVPDLTDMTQQNAESALTDKKLKVGTVQKTTSQKYSKGHV
IRTTPKAGLSVKSRSTVNLIVSSGRQKYKIKDYTNQAYSDVRDALKDKGLKVKRKYQSSSEVSPGLIIDQSIAAGKRVVP
SKTTITLTVSSGKPGFALHNLSNYTKQGIQDYAAQNGLTVVFSEEYSSSISEGMVISQSPASGTMVQEGDSVSVILSKGE
QPTEHHSVVTSSSNSVIESSAPESSQSSESSASESESESESESESESASESISSSASQSSQSSVQSK

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=498693 KIK01_RS03975 WP_099960271.1 776399..778282(+) (pknB) [Latilactobacillus sakei subsp. sakei strain ob4.1]
ATGATGGAAACAGGGTACGCTGTAGCGGGGCGTTATAAGATTATTCGCCCCATCGGTGAAGGCGGCATGGCTAATGTTTA
TTTGGCGCAGGATCTAATTTTAGATCGGCAAGTGGCAGTTAAAGTTTTACGATTAGATCTCCGGAATGATCCAGACACAG
TCCGACGGTTTACGCGAGAAGCGTTGGCAACGACTGAATTAAATCATCCGAATATTGTTAGTATTTACGATGTTGGTGAA
GAAAACAGTATGCAATACATCATTATGGAATATATTAAGGGCACCGATCTTAAGAAATATATCGTGGAACACTTTCCAAT
TCCTTATCAACGCGTAATTGATATTATGACGCAGATTTTATCTGCGGTTCAAAACGCACATGCGCATAATATTATTCACC
GGGATTTAAAACCACAAAATATTTTGGTTGATGAAGACGGCAATGTTAAGATTAGTGACTTTGGGATTGCGATTGCGCTC
AGCGAAACAGCGATGACTCAGACCAACACGTTGTTGGGGTCTGTGCATTATCTCTCACCGGAACAGGCAAGAGGCTCGAT
GGCGACGAAACGGTCTGATATTTACTCGTTAGGAATTGTGCTTTATGAGTTATTGACGGGGATGGTGCCTTTTGAAGGCG
AGTCCGCTGTTTCAATTGCGATTAAGCATTTCCAAGATGAAGTCCCACCAGTACGCAACTATGATCCACGTATTCCGCAA
GCCTTGGAAAATGTCGTTTTAAAAGCGACTGCCAAGGATCCGGATGAACGCTATAGTGGTGTTGATGCAATGATGGCTGA
CTTAGCAACTTCTTTATCAGCTAGTCGTGCGCACGAACCTAAATTTGTGCCATCAAAAGCGGATGATTTGAGTGAGACTA
AGGTGATTCCCGCACTAGATCCAGAAGGCATTACGCAAACCAACAACGATGAGGAACAAGTCAAAGAAGCAGAGCCAACT
CAGAAAAAGGTTAAAAAGCCAGCTAAGTCTAAACGTAAGTGGTGGCTACTAGGTGGCGGTGTTGTTTTATTGCTGTTATT
AGCAACGGTGATTGCTTTTGCAGTTCAGGGGAGCGAAGTAACCGTCCCTGATTTAACGGATATGACACAACAAAATGCGG
AATCTGCTTTGACCGATAAAAAACTGAAGGTCGGCACGGTTCAAAAAACAACGAGTCAGAAATACAGTAAGGGCCACGTC
ATTCGAACAACACCTAAAGCGGGCCTGAGTGTAAAATCAAGAAGTACGGTTAATTTAATTGTCAGTTCAGGACGCCAAAA
GTATAAGATTAAAGACTATACGAACCAAGCATATAGTGATGTTCGGGATGCTTTGAAGGATAAAGGCTTGAAAGTTAAAC
GGAAATACCAAAGTTCATCTGAAGTGAGTCCTGGGTTGATTATCGATCAAAGTATTGCGGCTGGCAAAAGGGTCGTTCCA
AGTAAAACGACGATTACCTTAACAGTCAGCAGCGGCAAACCTGGTTTTGCATTGCATAATCTAAGCAACTATACAAAGCA
AGGGATTCAAGACTATGCTGCACAAAATGGTTTAACGGTCGTATTCTCTGAAGAATATTCATCAAGTATTTCTGAAGGAA
TGGTAATCAGTCAATCGCCTGCAAGTGGTACAATGGTTCAAGAAGGTGATAGCGTAAGCGTTATCCTTTCAAAAGGCGAG
CAACCAACTGAACATCATTCTGTTGTGACGTCGAGTTCAAATTCAGTTATCGAGTCGAGTGCGCCTGAATCAAGTCAATC
GAGTGAAAGTAGCGCGAGTGAGTCAGAGAGCGAATCAGAGAGTGAATCGGAAAGCGAATCAGCAAGTGAATCGATCAGTA
GTTCAGCTAGTCAAAGTAGTCAATCGAGCGTTCAATCAAAGTAA

Domains

Predicted by InterProScan.

Protein kinase domain (Pkinase)

(12-263)

PASTA domain (PASTA)

(429-490)

PASTA domain (PASTA)

(360-422)

PASTA domain (PASTA)

(500-558)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

41.88

93.301

0.391
  stkP Streptococcus pneumoniae TIGR4

40.304

94.577

0.381
  stkP Streptococcus pneumoniae D39

40.135

94.577

0.38
  stkP Streptococcus pneumoniae R6

40.135

94.577

0.38
  stkP Streptococcus pneumoniae Rx1

39.966

94.577

0.378