Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   KIK01_RS00630 Genome accession   NZ_CP075489
Coordinates   124807..127098 (+) Length   763 a.a.
NCBI ID   WP_213923351.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 119807..132098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS00605 (KIK01_00605) - 120307..120765 (+) 459 WP_011373843.1 MarR family transcriptional regulator -
  KIK01_RS00610 (KIK01_00610) - 121011..121913 (-) 903 WP_011373844.1 proline-specific peptidase family protein -
  KIK01_RS00615 (KIK01_00615) - 121987..123825 (-) 1839 WP_213923350.1 cation:proton antiporter family protein -
  KIK01_RS00620 (KIK01_00620) crcB 123962..124369 (+) 408 WP_035146059.1 fluoride efflux transporter CrcB -
  KIK01_RS00625 (KIK01_00625) - 124366..124713 (+) 348 WP_016264410.1 CrcB family protein -
  KIK01_RS00630 (KIK01_00630) helD 124807..127098 (+) 2292 WP_213923351.1 RNA polymerase recycling motor HelD Machinery gene
  KIK01_RS00635 (KIK01_00635) coaA 127206..128135 (+) 930 WP_213923352.1 type I pantothenate kinase -
  KIK01_RS00640 (KIK01_00640) guaA 128302..129855 (+) 1554 WP_016264413.1 glutamine-hydrolyzing GMP synthase -
  KIK01_RS00645 (KIK01_00645) - 129976..131190 (-) 1215 WP_213923353.1 site-specific integrase -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87712.78 Da        Isoelectric Point: 6.6832

>NTDB_id=498665 KIK01_RS00630 WP_213923351.1 124807..127098(+) (helD) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLETLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMGVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVKGRVLITKEHISEVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQDHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADKLSTAIITKTLVQAQELTKMLKKTGTKVTLIRSENQRLAAGTLVAPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDALSPLIDNVDPEKYTLIK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=498665 KIK01_RS00630 WP_213923351.1 124807..127098(+) (helD) [Latilactobacillus sakei subsp. sakei strain ob4.1]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTCAACGATGTTCGCCTTAACTTCA
ACAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGAAACCTTGCAAAAGATGGAAAAGACGCCATACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGGTTAGGCTCATTTACAGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGTGCGGTGACGTACCAAACACCAGACGGCCCGCAAGAT
GTGAATATCTCACTTAAACGCCAATTCTTAATTGAAGATGGCCAAATCAAGGCCTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCCGATACGCAGATGAAGAGTATCGTCACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACCGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACATCAGCTATC
TTGCAACGCATTGCGTTTTTACTCTATCGCTATCGGGGGAATTTAGATTCGAGCCAAGTGATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGCGAACAAAATATGATTCAAATGACTTACTTCCAATATG
TGGCACGCCGGTTACCAAACATGGGGGTCCAGAGCCTTTTTGACCAATTCGAAACACCGGTTAACGAAACCGATGGCCGG
ATTAGTCGCTTGAAAGAAAGTCTCGTCTTTTATAAGGCTGTTAAAAAATACGCTGCGCATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCAAGGGCCGCGTCTTGATTACGAAGGAACACATCAGCGAGGTTTATTACCGGTTTAATGAAA
ACTACCATCTCGGCAATCGATTAGATGCGACTAAAGAAAGTTTGTTGCGGACATTGAGCCACAAGGTTGATCACGAAACC
AAGGCTGACTGGGTGACTGAGCAAGCCGAGAATATGAGTGATGAAGAAATTCGCGAGTTGATGTCTGGTAAAGATTTCAA
GACGGGTGACGCTGAAAGCAAGTTTATCGCTAAGCAAATCGTGCTAGAGGCCTTCAAACCCGTTCGCCGGTCTATTCAAC
GCAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGGGTTGTGCCACAACTTGTGAAGTTAGCCGATTTT
GATATTACAGAAGAGCAATGGCAAGACCACGTCACGCATTTTGTCGCACAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACACCTTATCTTCACCTCTACGATTTGATGACGGGTAAAAAAGGCGAACGTGATATGCGTTTTGTCTTCATCGATG
AAATTCAAGATTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCACTTCCCTAAGGCGCGCTTCACATTATTGGGCGAT
TTGAACCAAGCGATTTTCACTAAAGGCAACAGCACAAATCTCTTGCAACAAGTGCAACAATTATTTGATGCCCAAAATAC
AAAAGTGGTGCAATTAACGCGTTCATACCGGTCAACGCAACAAGTGACCGACTTTACCAAGGGCTTATTAAAAGGTGGCC
AAGCCATCGAAGCCTTCAACCGCGTTGGCGATAAACCAAACTTAATTGTGCGCCAATCAGAAGCTGAGTTAGTGGCTGAT
GTTAACCGCCAATTAGCCGCAAATGAAGCGGATAAATTATCGACGGCGATTATTACCAAGACATTGGTGCAAGCCCAAGA
ATTGACGAAGATGCTCAAGAAAACGGGAACCAAAGTCACCTTGATTCGTTCCGAAAACCAACGTTTAGCAGCCGGGACAT
TAGTGGCCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGCTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGGCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACTGATGCACT
CTCACCACTGATTGATAACGTCGATCCAGAAAAATATACATTAATAAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(214-566)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(701-741)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.342

100

0.388