Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KIP81_RS08260 Genome accession   NZ_CP075172
Coordinates   1653902..1654687 (-) Length   261 a.a.
NCBI ID   WP_021143055.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648902..1659687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS08240 (KIP81_08230) - 1649320..1650231 (-) 912 WP_243602785.1 DMT family transporter -
  KIP81_RS08245 (KIP81_08235) gatB 1650405..1651847 (-) 1443 WP_021143052.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  KIP81_RS08250 (KIP81_08240) gatA 1651847..1653313 (-) 1467 WP_024343597.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  KIP81_RS08255 (KIP81_08245) gatC 1653313..1653615 (-) 303 WP_004233135.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  KIP81_RS08260 (KIP81_08250) codY 1653902..1654687 (-) 786 WP_021143055.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KIP81_RS08265 (KIP81_08255) - 1654892..1656106 (-) 1215 WP_045798493.1 pyridoxal phosphate-dependent aminotransferase -
  KIP81_RS08270 (KIP81_08260) - 1656143..1657897 (-) 1755 WP_243602786.1 glycerophosphodiester phosphodiesterase -
  KIP81_RS08275 (KIP81_08265) - 1658215..1658667 (+) 453 WP_021143058.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28891.01 Da        Isoelectric Point: 4.4574

>NTDB_id=497433 KIP81_RS08260 WP_021143055.1 1653902..1654687(-) (codY) [Streptococcus equinus strain SheepZ001]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNSCIINGGGNLLGYAMKYKTNTDRVEEFFQAKQFPEEYV
KAASRVYDTEANLSVDNDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFSEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=497433 KIP81_RS08260 WP_021143055.1 1653902..1654687(-) (codY) [Streptococcus equinus strain SheepZ001]
ATGCCGAATTTATTAGAAAAAACTAGAAAGATTACGTCAATTTTGCAACGCTCAGTTGATAGCCTTGATACCGAATTACC
ATATAACACAATGGCTGCTCAACTTGCTGATATCATTGACTGTAACTCTTGCATCATCAACGGAGGAGGAAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGTGTTGAAGAATTCTTTCAAGCGAAACAATTTCCTGAAGAATATGTA
AAAGCGGCTAGTCGTGTTTACGATACTGAAGCTAACTTGTCTGTAGATAATGATTTGACAATCTTCCCAGTTGAATCAAA
AGATATTTACCCTGATGGATTGACAACTATCGCTCCAATCTACGGTGGCGGTATGCGTCTTGGTTCTCTTATCATTTGGC
GTAATGATAAAGAATTTTCAGAAGATGATTTGATCCTTGTTGAAATCGCCTCTACAGTAGTTGGTATCCAATTACTTAAC
CTTCAAACTGAAAACCTTGAAGAAACAATTCGTAAACAAACAGCTGTTAACATGGCGATTAACACACTATCTTACTCAGA
AATGAAAGCAGTATCTGCTATTTTGGGTGAACTTGATGGTACAGAAGGTCGTTTGACTGCATCTGTTATCGCTGACCGTA
TTGGTATTACACGTTCTGTTATCGTTAATGCCCTACGTAAATTGGAATCAGCTGGTATCATCGAAAGCCGTTCATTGGGT
ATGAAAGGTACTTACCTTAAAGTTATCAATGAAGGTATCTTCGACAAACTTAAAGAATACAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.9

100

0.659
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494