Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BACVE_RS02940 Genome accession   NZ_CP063687
Coordinates   603859..604437 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain NST6     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 598859..609437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS02905 (BACVE_000589) - 599050..600519 (+) 1470 WP_017417405.1 sodium:solute symporter -
  BACVE_RS02910 (BACVE_000590) - 600561..600878 (+) 318 WP_003155166.1 YbjQ family protein -
  BACVE_RS02915 (BACVE_000591) - 600911..601180 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  BACVE_RS02920 (BACVE_000592) - 601376..602086 (+) 711 WP_017417404.1 YrpD family protein -
  BACVE_RS02925 (BACVE_000593) - 602315..602824 (-) 510 WP_123117709.1 MepB family protein -
  BACVE_RS02930 (BACVE_000594) - 602947..603318 (-) 372 WP_017417402.1 iron chaperone -
  BACVE_RS02935 (BACVE_000595) - 603345..603713 (-) 369 WP_012117235.1 iron chaperone -
  BACVE_RS02940 (BACVE_000596) comK 603859..604437 (-) 579 WP_003155179.1 competence protein ComK Regulator
  BACVE_RS02945 (BACVE_000597) - 604752..604985 (+) 234 WP_007610478.1 IDEAL domain-containing protein -
  BACVE_RS02950 (BACVE_000598) - 605016..605873 (-) 858 WP_007610477.1 SDR family oxidoreductase -
  BACVE_RS02955 (BACVE_000599) - 605998..607521 (+) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  BACVE_RS02960 (BACVE_000600) - 607644..608936 (+) 1293 WP_014417354.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=496258 BACVE_RS02940 WP_003155179.1 603859..604437(-) (comK) [Bacillus velezensis strain NST6]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=496258 BACVE_RS02940 WP_003155179.1 603859..604437(-) (comK) [Bacillus velezensis strain NST6]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCAGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823