Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   INQ56_RS06870 Genome accession   NZ_CP063360
Coordinates   1354473..1354934 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus altitudinis strain BIM B-263     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349473..1359934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ56_RS06845 (INQ56_06845) - 1349876..1350760 (+) 885 WP_056704830.1 cation diffusion facilitator family transporter -
  INQ56_RS06850 (INQ56_06850) - 1350824..1350976 (-) 153 WP_017367142.1 hypothetical protein -
  INQ56_RS06855 (INQ56_06855) - 1351277..1351816 (+) 540 WP_039169112.1 RDD family protein -
  INQ56_RS06860 (INQ56_06860) - 1351942..1353252 (+) 1311 WP_173407971.1 MFS transporter -
  INQ56_RS06865 (INQ56_06865) - 1353326..1354234 (+) 909 WP_024719666.1 chemotaxis protein -
  INQ56_RS06870 (INQ56_06870) kre 1354473..1354934 (-) 462 WP_008356877.1 YkyB family protein Regulator
  INQ56_RS06875 (INQ56_06875) - 1355412..1355627 (-) 216 WP_008348016.1 hypothetical protein -
  INQ56_RS06880 (INQ56_06880) - 1355793..1355969 (+) 177 WP_165783671.1 hypothetical protein -
  INQ56_RS06885 (INQ56_06885) - 1356281..1357633 (-) 1353 WP_173407720.1 IS1182 family transposase -
  INQ56_RS06890 (INQ56_06890) - 1357776..1359053 (-) 1278 WP_008348012.1 MFS transporter -
  INQ56_RS06895 (INQ56_06895) - 1359127..1359624 (-) 498 WP_073414335.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=494687 INQ56_RS06870 WP_008356877.1 1354473..1354934(-) (kre) [Bacillus altitudinis strain BIM B-263]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=494687 INQ56_RS06870 WP_008356877.1 1354473..1354934(-) (kre) [Bacillus altitudinis strain BIM B-263]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCTGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765