Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SALIVA_RS02160 Genome accession   NC_017595
Coordinates   419008..420813 (+) Length   601 a.a.
NCBI ID   WP_014633984.1    Uniprot ID   A0A1V0GB58
Organism   Streptococcus salivarius JIM8777     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 414008..425813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS02150 (SALIVA_0431) - 414800..416737 (+) 1938 WP_014633982.1 GbpC/Spa domain-containing protein -
  SALIVA_RS02155 (SALIVA_0432) - 418038..418997 (+) 960 WP_014633983.1 competence protein CoiA -
  SALIVA_RS02160 (SALIVA_0433) pepF 419008..420813 (+) 1806 WP_014633984.1 oligoendopeptidase F Regulator
  SALIVA_RS02165 (SALIVA_0434) - 421025..422245 (+) 1221 WP_014633985.1 OFA family MFS transporter -
  SALIVA_RS02170 (SALIVA_0435) - 422317..423024 (+) 708 WP_014633986.1 O-methyltransferase -
  SALIVA_RS02175 (SALIVA_0436) - 423086..424228 (+) 1143 WP_014633987.1 peptidyl-prolyl cis-trans isomerase -
  SALIVA_RS02180 (SALIVA_0440) - 424567..425052 (+) 486 WP_014633989.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69084.09 Da        Isoelectric Point: 4.5414

>NTDB_id=49456 SALIVA_RS02160 WP_014633984.1 419008..420813(+) (pepF) [Streptococcus salivarius JIM8777]
MSDNRAHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDDKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEDLVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=49456 SALIVA_RS02160 WP_014633984.1 419008..420813(+) (pepF) [Streptococcus salivarius JIM8777]
ATGTCAGACAATCGTGCTCATTTAGAAGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACTGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTCTTAGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGGCTTTACCAAGAGTACCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
ATACTTTGAGCCTGAATTTATGGCCTTGGATGATAAGAAATTAGCTGAGTTTAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGCCTTTTGGCAAACAAGGACCACGTTCTTTCTCAAGAAGCTGAGGAGCTCTTGGCAGCAGCA
GGTGATATCTTCAACGGTCCAACGGATACCTTCAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
TCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTATGGGACCTACGAGCAGTTCCAACATACTTATGCACAAACACTCCAAGGCGTTGTCAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCAGCTAACTTTATTCCAGAAAGTGTTTA
TGATTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCATCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGGC
TTGACGAGCTTAAGATGTATGATGTCTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCCTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGTTCAGGTGCTTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGATACTTTGGACAATCTCTTTACCTTGGTTCACGAGACTGGTCATAGTTTGCATTCAACGTTCACACGTCAGACT
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCGGAAATTGCGTCTACAACCAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAGGTCAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACACAATTTGCAGAGTTTGAACATGCTATCCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCCGACTTC
ATGAATAAGCTTTACGCAGATCTCAATGAGAAATACTATAATCTCAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCGGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCATGGTACTGAAGAAGATAAGGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAATTGGAAGACTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GB58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.501

100

0.995

Multiple sequence alignment