Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   INQ48_RS01285 Genome accession   NZ_CP063166
Coordinates   274700..276238 (-) Length   512 a.a.
NCBI ID   WP_203203699.1    Uniprot ID   -
Organism   Variovorax paradoxus strain VAI-C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 269700..281238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ48_RS01275 (INQ48_01275) tagF 271854..272573 (+) 720 WP_203203697.1 type VI secretion system-associated protein TagF -
  INQ48_RS01280 (INQ48_01280) - 272602..274611 (+) 2010 WP_203203698.1 serine/threonine-protein kinase -
  INQ48_RS01285 (INQ48_01285) comM 274700..276238 (-) 1539 WP_203203699.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  INQ48_RS01290 (INQ48_01290) - 276453..277331 (+) 879 WP_203203700.1 TorF family putative porin -
  INQ48_RS01295 (INQ48_01295) glnK 277396..277734 (+) 339 WP_057597341.1 P-II family nitrogen regulator -
  INQ48_RS01300 (INQ48_01300) - 277764..279191 (+) 1428 WP_203203701.1 ammonium transporter -
  INQ48_RS01305 (INQ48_01305) - 279455..280384 (+) 930 WP_203203702.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54000.74 Da        Isoelectric Point: 8.8769

>NTDB_id=493677 INQ48_RS01285 WP_203203699.1 274700..276238(-) (comM) [Variovorax paradoxus strain VAI-C]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPMALGILAASGQIEGARLAGHEFAGELSLSGELRPVRGALAMALALHTRGIATRLVLPATSAAEAALVPGAEVHGA
RHLLDVVRRFLPADAQADQDAEDDGWSRARASAPASAPAYADMADVKGHAGAKRALEIAAAGGHSLLMMGEPGSGKSMLG
QRFAGLLPPMRIDEALESAAIASLGGRFSTERWMHRPTASPHHTSSAVALVGGGSPPRPGEISMAHHGVLFLDEFPEFSR
AALEALREPLETGTITIARAARRADFPARFQLVAAMNPCPCGFLGAPAKACRCTPDQVARYQRKLSGPLLDRIDLHIEVP
AISAPQLLDAPAGEATAAIRARVVAARERAIERQGRPNQALQGADIDRHAALGDEARRFMHTAAARLGWSARSTHRALKV
GRTIADLAGSQVIETAHVAEAVQYRRALQKGL

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=493677 INQ48_RS01285 WP_203203699.1 274700..276238(-) (comM) [Variovorax paradoxus strain VAI-C]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCCTTGCTCGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCCAA
CGGCCTGCCGAGCTTCACGCTGGTCGGGCTCGCCGAAACCGAGGTCAAGGAAGCGCGCGAGCGCGTGCGCTCGGCCATCC
AGAACGCCGGGCTGGAGTTCCCGCACAACAAGCGCATCACCGTGAACCTCGCGCCGGCCGACCTGCCCAAGGACTCGGGC
CGCTTCGACCTGCCGATGGCGCTGGGCATCCTCGCGGCCAGCGGCCAGATCGAGGGCGCGCGGCTCGCGGGCCACGAGTT
CGCGGGCGAGCTCTCGCTGTCGGGCGAGCTGCGGCCGGTGCGCGGCGCGCTCGCGATGGCGCTCGCGCTGCACACGCGCG
GCATCGCCACCCGGCTGGTGCTGCCCGCGACCAGCGCCGCCGAGGCCGCGCTGGTGCCCGGCGCCGAGGTCCATGGCGCC
AGGCATCTGCTCGACGTGGTGCGGCGCTTCCTGCCGGCCGATGCGCAGGCCGACCAGGACGCGGAGGACGACGGCTGGTC
GCGCGCCCGGGCGTCGGCGCCAGCCAGCGCCCCCGCCTATGCCGACATGGCCGACGTGAAGGGCCATGCCGGCGCCAAGC
GCGCGCTCGAGATCGCCGCGGCCGGCGGCCACAGCCTCCTGATGATGGGCGAGCCGGGCTCGGGCAAGTCGATGCTGGGC
CAGCGCTTCGCCGGCCTGCTGCCGCCGATGCGCATCGACGAGGCGCTCGAGAGCGCGGCCATCGCGAGCCTCGGCGGACG
CTTCTCGACCGAGCGCTGGATGCACCGGCCGACCGCGTCGCCGCACCACACCTCGAGCGCGGTGGCGCTGGTCGGCGGCG
GTTCGCCGCCGCGGCCCGGCGAGATCTCGATGGCGCACCACGGCGTGCTGTTCCTCGACGAGTTCCCCGAGTTTTCGCGC
GCCGCGCTCGAGGCGCTGCGCGAACCGCTCGAGACCGGCACCATCACCATCGCGCGGGCCGCGCGGCGGGCGGATTTTCC
GGCGCGCTTTCAACTCGTGGCCGCCATGAATCCATGCCCCTGCGGCTTTTTGGGCGCCCCCGCGAAGGCCTGCCGCTGCA
CGCCCGACCAGGTGGCGCGCTACCAGCGCAAGCTCAGCGGCCCCCTGCTCGACCGCATCGACCTGCACATCGAAGTGCCC
GCGATATCGGCGCCGCAGCTGCTCGACGCGCCCGCGGGCGAAGCCACCGCCGCCATCCGCGCGCGCGTGGTCGCCGCGCG
CGAACGCGCGATCGAGCGCCAGGGCCGGCCCAACCAGGCGCTGCAGGGCGCCGACATCGACCGCCATGCGGCGCTGGGCG
ACGAGGCGCGCCGCTTCATGCACACGGCCGCCGCCCGGCTCGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTGAAGGTG
GGTCGCACCATCGCCGACCTCGCGGGGTCACAGGTCATCGAGACCGCGCATGTGGCGGAGGCGGTGCAGTACCGGCGGGC
GCTGCAGAAGGGCCTGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.081

99.414

0.508
  comM Haemophilus influenzae Rd KW20

49.126

100

0.494
  comM Glaesserella parasuis strain SC1401

48.369

100

0.492
  comM Vibrio campbellii strain DS40M4

48.532

99.805

0.484
  comM Legionella pneumophila str. Paris

47.656

100

0.477
  comM Legionella pneumophila strain ERS1305867

47.656

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.578

100

0.426