Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IMY14_RS05685 Genome accession   NZ_CP063150
Coordinates   1105529..1106107 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100529..1111107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS05665 hemAT 1101040..1102338 (-) 1299 WP_174616632.1 heme-based aerotactic transducer HemAT -
  IMY14_RS05670 comW 1102477..1104006 (-) 1530 WP_174616631.1 FAD-dependent oxidoreductase -
  IMY14_RS05675 yhxC 1104118..1104975 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  IMY14_RS05680 yhzC 1105003..1105236 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  IMY14_RS05685 comK 1105529..1106107 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  IMY14_RS05690 yhxD 1106154..1107053 (-) 900 WP_047182383.1 SDR family oxidoreductase -
  IMY14_RS05695 yhjA 1107271..1107540 (+) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  IMY14_RS05700 yhjB 1107584..1109053 (-) 1470 WP_015383277.1 sodium:solute symporter -
  IMY14_RS05705 yhjC 1109050..1109250 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  IMY14_RS05710 - 1109458..1109820 (-) 363 WP_003233132.1 hypothetical protein -
  IMY14_RS05715 yhjE 1109972..1110595 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  IMY14_RS05720 lepB 1110597..1111103 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=493375 IMY14_RS05685 WP_015483050.1 1105529..1106107(+) (comK) [Bacillus subtilis strain s-16]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=493375 IMY14_RS05685 WP_015483050.1 1105529..1106107(+) (comK) [Bacillus subtilis strain s-16]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99