Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IL989_RS11860 Genome accession   NZ_CP062984
Coordinates   2430819..2431586 (-) Length   255 a.a.
NCBI ID   WP_193350448.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2425819..2436586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS11840 (IL989_11840) - 2426021..2426833 (-) 813 WP_013352914.1 pyruvate, water dikinase regulatory protein -
  IL989_RS11845 (IL989_11845) ccpN 2426859..2427497 (-) 639 WP_014470676.1 transcriptional regulator CcpN -
  IL989_RS11850 (IL989_11850) glyS 2427598..2429637 (-) 2040 WP_193350447.1 glycine--tRNA ligase subunit beta -
  IL989_RS11855 (IL989_11855) glyQ 2429630..2430517 (-) 888 WP_013352917.1 glycine--tRNA ligase subunit alpha -
  IL989_RS11860 (IL989_11860) recO 2430819..2431586 (-) 768 WP_193350448.1 DNA repair protein RecO Machinery gene
  IL989_RS11865 (IL989_11865) - 2431623..2431766 (-) 144 WP_007408286.1 YqzL family protein -
  IL989_RS11870 (IL989_11870) era 2431921..2432826 (-) 906 WP_014470680.1 GTPase Era -
  IL989_RS11875 (IL989_11875) - 2432807..2433217 (-) 411 WP_045510514.1 cytidine deaminase -
  IL989_RS11880 (IL989_11880) - 2433340..2433714 (-) 375 WP_014470681.1 diacylglycerol kinase family protein -
  IL989_RS11885 (IL989_11885) ybeY 2433695..2434168 (-) 474 WP_065522747.1 rRNA maturation RNase YbeY -
  IL989_RS11890 (IL989_11890) - 2434169..2436301 (-) 2133 WP_013352923.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29284.98 Da        Isoelectric Point: 8.7962

>NTDB_id=492260 IL989_RS11860 WP_193350448.1 2430819..2431586(-) (recO) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELIDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=492260 IL989_RS11860 WP_193350448.1 2430819..2431586(-) (recO) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTAACGGCATATGCCGCTTTTATCGCTGAACTTATTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGTAAAAGCCAGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTAATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.588

100

0.906