Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   KHA81_RS09010 Genome accession   NZ_CP074391
Coordinates   1777050..1777481 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain L-17     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772050..1782481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS08990 spoVS 1772618..1772878 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  KHA81_RS08995 tdh 1773138..1774184 (+) 1047 WP_015388219.1 L-threonine 3-dehydrogenase -
  KHA81_RS09000 - 1774197..1775375 (+) 1179 WP_131258772.1 glycine C-acetyltransferase -
  KHA81_RS09005 miaB 1775518..1777047 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  KHA81_RS09010 ymcA 1777050..1777481 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  KHA81_RS09015 cotE 1777735..1778280 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  KHA81_RS09020 hexA 1778399..1780984 (+) 2586 WP_003154108.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=491193 KHA81_RS09010 WP_003154113.1 1777050..1777481(+) (ymcA) [Bacillus amyloliquefaciens strain L-17]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=491193 KHA81_RS09010 WP_003154113.1 1777050..1777481(+) (ymcA) [Bacillus amyloliquefaciens strain L-17]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAGCAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916