Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KE639_RS02625 Genome accession   NZ_CP074111
Coordinates   550290..550892 (+) Length   200 a.a.
NCBI ID   WP_061446291.1    Uniprot ID   A0ABW8BD17
Organism   Streptomyces sp. V17-9     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 545290..555892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE639_RS02600 (KE639_00520) - 545995..547272 (-) 1278 WP_249338431.1 FAD-dependent monooxygenase -
  KE639_RS02605 (KE639_00521) - 547354..548052 (-) 699 WP_212729237.1 ribonuclease H -
  KE639_RS02610 (KE639_00522) - 548084..548881 (-) 798 WP_165286626.1 VOC family protein -
  KE639_RS02615 (KE639_00523) - 548933..549415 (-) 483 WP_125634134.1 VOC family protein -
  KE639_RS02620 (KE639_00524) clpP 549635..550288 (+) 654 WP_186779568.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KE639_RS02625 (KE639_00525) clpP 550290..550892 (+) 603 WP_061446291.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KE639_RS02630 - 550953..551387 (-) 435 WP_165286625.1 helix-turn-helix transcriptional regulator -
  KE639_RS02635 (KE639_00527) - 551615..552469 (+) 855 WP_102932147.1 RNA polymerase sigma factor SigF -
  KE639_RS02640 (KE639_00528) - 552503..552958 (-) 456 WP_102932148.1 ATP-binding protein -
  KE639_RS02645 (KE639_00529) - 553126..553710 (+) 585 WP_212729238.1 PRC-barrel domain-containing protein -
  KE639_RS02650 (KE639_00530) - 553707..554126 (+) 420 WP_212729239.1 PRC-barrel domain-containing protein -
  KE639_RS02655 (KE639_00531) - 554281..555564 (+) 1284 WP_212732337.1 streptophobe family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21676.66 Da        Isoelectric Point: 5.0496

>NTDB_id=490575 KE639_RS02625 WP_061446291.1 550290..550892(+) (clpP) [Streptomyces sp. V17-9]
MGSYTIPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAIYINSPGGSFTSLMAIY
DTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLGQPASGGRQGTVSDLALQAKEMVRIRSQVEEVLARH
TRHDVATLRADMDRDKVFTAEDAVAYGLADEVLVRRLARV

Nucleotide


Download         Length: 603 bp        

>NTDB_id=490575 KE639_RS02625 WP_061446291.1 550290..550892(+) (clpP) [Streptomyces sp. V17-9]
ATGGGGAGCTACACGATTCCGAACGTCGTCGAGCGGACCCCGCAGGGCGAGCGGTCCTACGACGTGTTCAGCCGGCTCCT
GTCGGAGCGGATCATCTTCCTGGGGACCGAGATCGACGACGGCGTGGCCAACGTCGTGATCGCGCAGCTCCTGCATCTGG
AGTCGTCGGCCCCGGAGAGCGAGATCGCGATCTACATCAACTCCCCCGGCGGCTCGTTCACGTCGCTGATGGCGATCTAC
GACACGATGACCTTCGTGCAGGCGCCGATCTCGACGTTCTGCGTCGGGCAGGCGGCGTCCACGGCGGCGGTGCTGCTGGC
GGGCGGGGACCCGGGGCGGCGGTTCGTCCTGGAGCACGCCCGGGTGCTGCTGGGGCAGCCGGCCAGCGGCGGCCGGCAGG
GCACGGTCTCCGACCTGGCGCTCCAGGCCAAGGAGATGGTGCGGATCCGCTCCCAGGTGGAGGAGGTACTGGCCCGCCAC
ACCCGGCACGACGTGGCGACGCTGCGCGCGGACATGGACCGCGACAAGGTGTTCACCGCCGAGGACGCGGTGGCGTACGG
ACTGGCCGACGAGGTGCTCGTCCGGCGCCTGGCGCGGGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

48.404

94

0.455
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.789

95

0.435
  clpP Streptococcus pyogenes MGAS315

39.683

94.5

0.375
  clpP Streptococcus pyogenes JRS4

39.683

94.5

0.375
  clpP Streptococcus pneumoniae Rx1

38.542

96

0.37
  clpP Streptococcus pneumoniae R6

38.542

96

0.37
  clpP Streptococcus pneumoniae TIGR4

38.542

96

0.37
  clpP Streptococcus pneumoniae D39

38.542

96

0.37
  clpP Lactococcus lactis subsp. cremoris KW2

38.22

95.5

0.365
  clpP Streptococcus mutans UA159

38.624

94.5

0.365