Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   IF696_RS07240 Genome accession   NZ_CP062420
Coordinates   1445177..1445746 (-) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_016     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1440177..1450746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF696_RS07200 (IF696_07165) - 1440651..1441259 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  IF696_RS07205 (IF696_07170) rplL 1441434..1441802 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  IF696_RS07210 (IF696_07175) rplJ 1441845..1442345 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  IF696_RS07215 (IF696_07180) rplA 1442617..1443309 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  IF696_RS07220 (IF696_07185) rplK 1443517..1443939 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  IF696_RS07225 (IF696_07190) nusG 1444120..1444668 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  IF696_RS07230 (IF696_07195) secE 1444681..1444863 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  IF696_RS07235 (IF696_07200) rpmG 1444919..1445062 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  IF696_RS07240 (IF696_07205) sigH 1445177..1445746 (-) 570 WP_000872874.1 RNA polymerase sigma factor Regulator
  IF696_RS07245 (IF696_07210) - 1445827..1446351 (-) 525 WP_000664738.1 NYN domain-containing protein -
  IF696_RS07250 (IF696_07215) rlmB 1446351..1447097 (-) 747 WP_000390336.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IF696_RS07255 (IF696_07220) - 1447105..1447509 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  IF696_RS07260 (IF696_07225) cysS 1447502..1448902 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  IF696_RS07265 (IF696_07230) cysE 1448886..1449533 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=490086 IF696_RS07240 WP_000872874.1 1445177..1445746(-) (sigH) [Staphylococcus aureus strain NAS_AN_016]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=490086 IF696_RS07240 WP_000872874.1 1445177..1445746(-) (sigH) [Staphylococcus aureus strain NAS_AN_016]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984