Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF695_RS13895 | Genome accession | NZ_CP062393 |
| Coordinates | 2787143..2787613 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain NAS_AN_009 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2775504..2793979 | 2787143..2787613 | within | 0 |
Gene organization within MGE regions
Location: 2775504..2793979
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF695_RS13790 (IF695_13790) | - | 2775504..2776541 (-) | 1038 | WP_000857198.1 | site-specific integrase | - |
| IF695_RS13795 (IF695_13795) | - | 2776714..2777253 (-) | 540 | WP_000391618.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IF695_RS13800 (IF695_13800) | - | 2777393..2777560 (-) | 168 | WP_000705247.1 | hypothetical protein | - |
| IF695_RS13805 (IF695_13805) | - | 2777764..2778105 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IF695_RS13810 (IF695_13810) | - | 2778111..2779043 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF695_RS13815 (IF695_13815) | - | 2779059..2779772 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF695_RS13820 (IF695_13820) | - | 2779735..2779908 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| IF695_RS13825 (IF695_13825) | - | 2779905..2780168 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IF695_RS13830 (IF695_13830) | - | 2780184..2780399 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| IF695_RS13835 (IF695_13835) | - | 2780388..2780717 (-) | 330 | WP_240025744.1 | hypothetical protein | - |
| IF695_RS13840 (IF695_13840) | - | 2780768..2781520 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| IF695_RS13845 (IF695_13845) | - | 2781536..2781733 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| IF695_RS13850 (IF695_13850) | - | 2781720..2782100 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| IF695_RS13855 (IF695_13855) | - | 2782155..2782478 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| IF695_RS13860 (IF695_13860) | - | 2782475..2782636 (+) | 162 | WP_000048132.1 | DUF1270 family protein | - |
| IF695_RS13865 (IF695_13865) | - | 2782731..2783033 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| IF695_RS13870 (IF695_13870) | - | 2783038..2783298 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| IF695_RS13875 (IF695_13875) | - | 2783307..2783570 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF695_RS13880 (IF695_13880) | - | 2783579..2785522 (+) | 1944 | WP_000700560.1 | AAA family ATPase | - |
| IF695_RS13885 (IF695_13885) | - | 2785524..2786444 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF695_RS13890 (IF695_13890) | - | 2786525..2787142 (+) | 618 | WP_240026369.1 | MBL fold metallo-hydrolase | - |
| IF695_RS13895 (IF695_13895) | ssbA | 2787143..2787613 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| IF695_RS13900 (IF695_13900) | - | 2787643..2788569 (+) | 927 | WP_240025746.1 | DnaD domain-containing protein | - |
| IF695_RS13905 (IF695_13905) | - | 2788576..2788794 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| IF695_RS13910 (IF695_13910) | - | 2788803..2789207 (+) | 405 | WP_113583883.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF695_RS13915 (IF695_13915) | - | 2789220..2789588 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF695_RS13920 (IF695_13920) | - | 2789592..2789834 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| IF695_RS13925 (IF695_13925) | - | 2789899..2790348 (+) | 450 | WP_000982711.1 | YopX family protein | - |
| IF695_RS13930 (IF695_13930) | - | 2790345..2790854 (+) | 510 | WP_001105598.1 | hypothetical protein | - |
| IF695_RS13935 (IF695_13935) | - | 2790851..2791261 (+) | 411 | WP_000197967.1 | hypothetical protein | - |
| IF695_RS13940 (IF695_13940) | - | 2791254..2791790 (+) | 537 | WP_001066443.1 | dUTP diphosphatase | - |
| IF695_RS13945 (IF695_13945) | - | 2791827..2792072 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| IF695_RS13950 (IF695_13950) | - | 2792069..2792275 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IF695_RS13955 (IF695_13955) | - | 2792272..2792658 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| IF695_RS13960 (IF695_13960) | - | 2792655..2792804 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF695_RS13965 (IF695_13965) | - | 2792804..2793004 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| IF695_RS13970 (IF695_13970) | - | 2793032..2793448 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF695_RS13975 (IF695_13975) | - | 2793680..2793979 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=489093 IF695_RS13895 WP_000934760.1 2787143..2787613(+) (ssbA) [Staphylococcus aureus strain NAS_AN_009]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=489093 IF695_RS13895 WP_000934760.1 2787143..2787613(+) (ssbA) [Staphylococcus aureus strain NAS_AN_009]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |