Detailed information NTG0488505

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KFU89_RS05040
• Genome accession: NZ_CP073943
• Coordinates: 1039814..1040806 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MB52
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1034814..1045806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFU89_RS05010 (KFU89_04970)	ispD	1034875..1035585 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KFU89_RS05015 (KFU89_04975)	ispF	1035585..1036064 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KFU89_RS05020 (KFU89_04980)	truD	1036061..1037110 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KFU89_RS05025 (KFU89_04985)	surE	1037091..1037852 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KFU89_RS05030 (KFU89_04990)	pcm	1037846..1038472 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KFU89_RS05035 (KFU89_04995)	nlpD	1038657..1039751 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KFU89_RS05040 (KFU89_05000)	rpoS	1039814..1040806 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KFU89_RS05045 (KFU89_05005)	ygbN	1040900..1042264 (-)	1365	WP_021547117.1	GntP family transporter	-
KFU89_RS05050 (KFU89_05010)	ygbM	1042353..1043129 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
KFU89_RS05055 (KFU89_05015)	ygbL	1043134..1043772 (-)	639	WP_001278994.1	aldolase	-
KFU89_RS05060 (KFU89_05020)	otnK	1043769..1045031 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=488505 KFU89_RS05040 WP_000081550.1 1039814..1040806(+) (rpoS) [Escherichia coli strain MB52]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=488505 KFU89_RS05040 WP_000081550.1 1039814..1040806(+) (rpoS) [Escherichia coli strain MB52]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715