Detailed information NTG0048820

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: K751_RS01605
• Genome accession: NC_021218
• Coordinates: 329789..331021 (-)
• Length: 410 a.a.
• NCBI ID: WP_015643196.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM066
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 324789..336021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K751_RS01565 (K751_06575)	-	324908..326635 (-)	1728	WP_015643203.1	type IV secretory system conjugative DNA transfer family protein	-
K751_RS01570 (K751_06570)	-	326636..327193 (-)	558	WP_015643202.1	hypothetical protein	-
K751_RS01575 (K751_06565)	-	327194..327484 (-)	291	WP_000159825.1	hypothetical protein	-
K751_RS01580 (K751_06560)	-	327481..327936 (-)	456	WP_015643201.1	hypothetical protein	-
K751_RS01585 (K751_06555)	-	327933..328874 (-)	942	WP_015643200.1	CpaF/VirB11 family protein	-
K751_RS01590 (K751_06550)	-	328874..329173 (-)	300	WP_015643199.1	hypothetical protein	-
K751_RS01595 (K751_06545)	-	329170..329433 (-)	264	WP_015643198.1	hypothetical protein	-
K751_RS01600 (K751_06540)	-	329426..329719 (-)	294	WP_015643197.1	hypothetical protein	-
K751_RS01605 (K751_06530)	comB10	329789..331021 (-)	1233	WP_015643196.1	DNA type IV secretion system protein ComB10	Machinery gene
K751_RS01610 (K751_06525)	-	331018..332559 (-)	1542	WP_015643195.1	TrbG/VirB9 family P-type conjugative transfer protein	-
K751_RS01615 (K751_06520)	-	332559..333545 (-)	987	WP_015643194.1	virB8 family protein	-
K751_RS08645	-	333547..333675 (-)	129	WP_015643193.1	hypothetical protein	-
K751_RS01620 (K751_06510)	-	333675..335609 (-)	1935	WP_031249972.1	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 46340.34 Da
• Isoelectric Point: 10.0980

>NTDB_id=48820 K751_RS01605 WP_015643196.1 329789..331021(-) (comB10) [Helicobacter pylori UM066]
MKKLLLLLEHKIIKISLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINKVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRV
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGISLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMQITRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFFN
EEKEQNNDTK

Nucleotide

• Length: 1233 bp

>NTDB_id=48820 K751_RS01605 WP_015643196.1 329789..331021(-) (comB10) [Helicobacter pylori UM066]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTAGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATAAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAATGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACATCTATAAAAAATAGTGTTTCTAACACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACAATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGTC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTTAAGGGTTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTTCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGCAAATAACGAGGCAAACTGG
TATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAGGAA
GCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTTAAT
GAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-386)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	54.483	70.732	0.385