Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   KEF49_RS15985 Genome accession   NZ_CP073635
Coordinates   3148398..3150713 (-) Length   771 a.a.
NCBI ID   WP_212099300.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3143398..3155713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS15975 (KEF49_15975) cysI 3144672..3146387 (-) 1716 WP_212099294.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  KEF49_RS15980 (KEF49_15980) - 3146415..3148223 (-) 1809 WP_212099297.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  KEF49_RS15985 (KEF49_15985) helD 3148398..3150713 (-) 2316 WP_212099300.1 RNA polymerase recycling motor HelD Machinery gene
  KEF49_RS15990 (KEF49_15990) - 3150882..3151490 (-) 609 WP_212099303.1 trimeric intracellular cation channel family protein -
  KEF49_RS15995 (KEF49_15995) - 3151713..3152513 (+) 801 WP_115996952.1 zinc-dependent metalloprotease -
  KEF49_RS16000 (KEF49_16000) - 3152547..3152966 (-) 420 WP_014471015.1 disulfide oxidoreductase -
  KEF49_RS16005 (KEF49_16005) - 3152956..3153627 (-) 672 WP_065982323.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88368.52 Da        Isoelectric Point: 6.5946

>NTDB_id=487678 KEF49_RS15985 WP_212099300.1 3148398..3150713(-) (helD) [Bacillus amyloliquefaciens strain Ba13]
MAKRDEEWKEEQGRINFVMKELNQKETRIEASSGGLKQDIVGLRKTFWDDVTVNLDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKASPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSEHSGRHMKNIVSTIQKEQNEIIRDEKSKFLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIARRLGRKFDCESPYEQLEYCLTE
QNQEALSVRLGAIAYKASSAFRTMIDRYAGSLSVSGLMCKQISFRGEILISKERIEDYFYSLDQQLPIPNRAELTAEWLL
GEISALEKKERKKEWVLQESELLDKEDYAQVYQKLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRQLGFLDI
KRMYLRLFSDWGSYEKPDHWQSIGALTRKAFAEQSLPYEDAAPYLYLQDLIEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPTAKMTVLGDISQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLDDGDDIEPFNRNGEKPRVL
RADTEKARQEQLTETIRELRQKGWETIAVICKTAAEAKKVFQAVSVASDVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IVADASVTQYKSQHDRKLLYTACTRAMHHLTVLSPGESSPFIKEVPASLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=487678 KEF49_RS15985 WP_212099300.1 3148398..3150713(-) (helD) [Bacillus amyloliquefaciens strain Ba13]
ATGGCAAAACGTGATGAAGAATGGAAAGAAGAGCAGGGACGAATCAATTTTGTAATGAAAGAACTGAATCAGAAAGAAAC
GCGGATTGAAGCATCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGAGAAAAACGTTCTGGGATGATGTCACCGTTA
ATTTGGATGACGCCCATGAAGCGGCGGAAACATTTTCAAGCATCAAACAGCAGGCGGAAATGCTTTCAGAGCGTGAACGG
ACGCATCGGCTTCAATATCGGCAGCTTCAAAAAATCCAAAAGCTGAAAGCCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAATCTTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTAATGGACGAAAACAATGAGCAATTTCTCA
TTTACGATTGGCGGGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTACGAAGTTCCGGAAGAA
ACCATAGAAGGCGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTCAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTAAGCGAACATTCCGGCCGGCATATGAAAAATATCGTGTCAACCATAC
AAAAAGAACAGAATGAAATCATCCGGGATGAAAAAAGCAAATTTCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTATTTGCTGTACCGAGGGCGCGGTGTCCTTGATGCCCGTCAGATTGTGCTGTTTTC
TCCGAACATTTTGTTCAACAGTTACGTTTCCGCCGTATTGCCGGAACTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCGCCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTCGAATATTGCCTGACTGAG
CAAAATCAGGAGGCGCTTTCCGTAAGGCTCGGAGCCATCGCCTACAAAGCGTCATCAGCTTTCCGGACCATGATTGACCG
TTACGCCGGATCGCTTTCCGTCTCCGGCCTGATGTGTAAACAGATCAGCTTCCGAGGAGAAATACTGATTTCAAAAGAGC
GGATTGAAGATTACTTTTACTCACTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GGGGAAATCAGCGCACTCGAAAAAAAGGAACGTAAGAAGGAATGGGTTCTGCAGGAGAGTGAGCTGCTTGATAAGGAAGA
CTATGCTCAGGTTTATCAAAAACTCAAGAAGCAAGCGGCGGATGATGAACCTGCTTTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATCATTGTGGGAAAAGCTTTTAAGCCGATTAAGCAGGCAGTCAGACAGCTTGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGATCCTATGAAAAGCCTGATCATTGGCAGAGCATCGGCGCTTTGAC
CCGGAAAGCGTTCGCAGAGCAGTCACTCCCTTATGAAGATGCAGCTCCGTATCTTTATTTACAGGACCTAATAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTATTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTGACGTATATTCAA
AGCATCTTCCCAACAGCGAAGATGACGGTGCTCGGTGATATCAGCCAGTCGATTTATGCCCACACCATCACGGGCCCTTC
TTCACTTGCCGGCTGCTTTCGCAATGGCGCAGAAAAATATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTCGATGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTCCTG
CGGGCGGATACAGAAAAAGCGCGGCAGGAGCAATTGACGGAAACAATACGGGAACTCAGGCAAAAAGGCTGGGAGACGAT
CGCCGTCATCTGCAAAACTGCCGCGGAAGCAAAAAAAGTATTTCAGGCGGTCAGTGTCGCAAGCGATGTCCGTTTGATCA
ATAAAGAAAATCAGCCTTTCCAAAAAGGGGTATGCGTCATTCCCGTGTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGTCGCTGACGCCTCTGTTACTCAATACAAAAGCCAGCATGACCGCAAGCTGTTATATACGGCCTGCACGCGGGCGAT
GCATCATCTGACCGTGCTGTCACCCGGAGAATCTTCTCCTTTTATAAAAGAAGTGCCCGCCAGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(601-683)

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.623

99.87

0.665