Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KEF49_RS05945 Genome accession   NZ_CP073635
Coordinates   1191612..1192748 (+) Length   378 a.a.
NCBI ID   WP_212101021.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186612..1197748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS05920 (KEF49_05920) - 1187191..1187766 (+) 576 Protein_1115 MFS transporter -
  KEF49_RS05925 (KEF49_05925) - 1187838..1188836 (+) 999 WP_212101016.1 LacI family DNA-binding transcriptional regulator -
  KEF49_RS19785 - 1188914..1189048 (+) 135 WP_257784743.1 hypothetical protein -
  KEF49_RS05930 (KEF49_05930) - 1188988..1189999 (+) 1012 Protein_1118 UxaA family hydrolase -
  KEF49_RS05935 (KEF49_05935) - 1190032..1190796 (-) 765 WP_065981227.1 sulfite exporter TauE/SafE family protein -
  KEF49_RS05940 (KEF49_05940) - 1190940..1191407 (-) 468 WP_212101019.1 DinB family protein -
  KEF49_RS05945 (KEF49_05945) rapC 1191612..1192748 (+) 1137 WP_212101021.1 Rap family tetratricopeptide repeat protein Regulator
  KEF49_RS05950 (KEF49_05950) - 1192738..1192872 (+) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  KEF49_RS05955 (KEF49_05955) - 1193016..1193969 (+) 954 WP_212101024.1 N-acetylmuramoyl-L-alanine amidase -
  KEF49_RS05960 (KEF49_05960) - 1194007..1194384 (-) 378 WP_212101027.1 PH domain-containing protein -
  KEF49_RS05965 (KEF49_05965) - 1194494..1195096 (+) 603 WP_212101030.1 poly-gamma-glutamate hydrolase family protein -
  KEF49_RS05970 (KEF49_05970) - 1195273..1195863 (-) 591 WP_013351933.1 ImmA/IrrE family metallo-endopeptidase -
  KEF49_RS05975 (KEF49_05975) xre 1196011..1196349 (-) 339 WP_013351934.1 HTH-type transcriptional regulator Xre -
  KEF49_RS05980 (KEF49_05980) - 1196540..1196719 (+) 180 WP_045506729.1 hypothetical protein -
  KEF49_RS05985 (KEF49_05985) - 1196709..1197536 (+) 828 WP_065981234.1 phage portal protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45049.34 Da        Isoelectric Point: 4.9782

>NTDB_id=487605 KEF49_RS05945 WP_212101021.1 1191612..1192748(+) (rapC) [Bacillus amyloliquefaciens strain Ba13]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICKSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKKMDNVSVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVNAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=487605 KEF49_RS05945 WP_212101021.1 1191612..1192748(+) (rapC) [Bacillus amyloliquefaciens strain Ba13]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTACACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAAATCGAGGATATGGAAGAAGATCAGGATCTGCTCCTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATTAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTATTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTCGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACTTGAAACAAACCTACGTCTCC
ATGAGCTATGCGGTACAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAAGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACCACCGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTGAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTAAATCTCTTTCAATTTTTACATGCGTTATACGGCAAGAAAATGGATAACGTATCCGTCAGG
CACACGTTTGATTTTCTGGAGGAACACATGCTGTATCCGTATGTGGAAGAACTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCACTCACGTTTTATGAAAAAATGGTGAACGCCCAAAAACAAATTCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(199-254)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426