Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IE382_RS01610 Genome accession   NZ_CP061870
Coordinates   303135..303425 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain FX-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 298135..308425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS01570 (IE382_01560) darA 298158..298487 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  IE382_RS01575 (IE382_01565) yaaR 298500..298940 (+) 441 WP_041334235.1 YaaR family protein -
  IE382_RS01580 (IE382_01570) holB 298952..299941 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  IE382_RS01585 (IE382_01575) ricT 299944..300771 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  IE382_RS01590 (IE382_01580) yabA 300786..301145 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  IE382_RS01595 (IE382_01585) trmNF 301204..301947 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IE382_RS01600 (IE382_01590) yazA 301934..302233 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  IE382_RS01605 (IE382_01595) rsmI 302208..303086 (+) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IE382_RS01610 (IE382_01600) abrB 303135..303425 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  IE382_RS01615 (IE382_01605) metG 303920..305914 (+) 1995 WP_017696382.1 methionine--tRNA ligase -
  IE382_RS01620 (IE382_01610) dayD 305993..306760 (+) 768 WP_144459518.1 TatD family hydrolase -
  IE382_RS01625 (IE382_01615) yabE 306916..308229 (+) 1314 WP_144459516.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=485405 IE382_RS01610 WP_003226760.1 303135..303425(-) (abrB) [Bacillus subtilis strain FX-1]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=485405 IE382_RS01610 WP_003226760.1 303135..303425(-) (abrB) [Bacillus subtilis strain FX-1]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1