Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IF132_RS12655 Genome accession   NZ_CP061845
Coordinates   1513040..1514827 (-) Length   595 a.a.
NCBI ID   WP_039423018.1    Uniprot ID   A0A099MFP0
Organism   Vibrio navarrensis strain 2540-90     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508040..1519827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS12635 (IF132_13675) - 1508724..1509551 (-) 828 WP_039423029.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  IF132_RS12640 (IF132_13680) - 1509631..1511136 (-) 1506 WP_039423026.1 AAA family ATPase -
  IF132_RS12645 (IF132_13685) aroB 1511188..1512279 (-) 1092 WP_039423024.1 3-dehydroquinate synthase -
  IF132_RS12650 (IF132_13690) aroK 1512312..1512830 (-) 519 WP_039423021.1 shikimate kinase AroK -
  IF132_RS12655 (IF132_13695) pilQ 1513040..1514827 (-) 1788 WP_039423018.1 type IV pilus secretin PilQ Machinery gene
  IF132_RS12660 (IF132_13700) pilP 1514846..1515358 (-) 513 WP_039423015.1 pilus assembly protein PilP Machinery gene
  IF132_RS12665 (IF132_13705) pilO 1515348..1515938 (-) 591 WP_039423012.1 type 4a pilus biogenesis protein PilO Machinery gene
  IF132_RS12670 (IF132_13710) pilN 1515931..1516518 (-) 588 WP_039423009.1 PilN domain-containing protein Machinery gene
  IF132_RS12675 (IF132_13715) pilM 1516502..1517521 (-) 1020 WP_039423006.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 64587.78 Da        Isoelectric Point: 4.7524

>NTDB_id=485034 IF132_RS12655 WP_039423018.1 1513040..1514827(-) (pilQ) [Vibrio navarrensis strain 2540-90]
MIREMTMKKGMIRLQAPLRQLMCLFAVCLFAAFANAQPENNSQSASENALKSIDFRTNQNKAAVIIVELASPAAVVDLKP
VQEGLSIELLNTRVSDEQLYLLDVKDFSTPVESVEVFRDVSATRLLASVSGEFRHEYRLTGRYLEVTVSRIETPQQAEEK
SILEKEGKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGNVVLIAPK
EELDLREKQHLEKQRLAEELGTLKSEIIKVNFAKASDIAEMISGTESVSMLSERGSIAIDERTNSLLLRELPENIAVIRE
IVNSLDIPVKQVQIEARIVTVNEGNLDELGVRWGFTSINGSHTVGGSIENNLASIGLYNAAGGGSGSGGDSGGGSSSIDD
FLNVNLGATSGNASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVS
FKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITSTVDKVP
LLGDLPLLGALFRRSYENIGKRELLIFVTPKVVIQ

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=485034 IF132_RS12655 WP_039423018.1 1513040..1514827(-) (pilQ) [Vibrio navarrensis strain 2540-90]
GTGATTAGAGAAATGACCATGAAGAAAGGAATGATTCGATTACAGGCTCCGCTACGCCAATTAATGTGCCTGTTTGCTGT
CTGCCTCTTTGCCGCGTTTGCAAACGCGCAGCCAGAGAATAACAGTCAGTCAGCGAGTGAGAATGCGCTGAAAAGCATTG
ATTTCAGAACCAACCAGAATAAAGCCGCGGTGATCATTGTCGAGTTGGCTTCGCCTGCCGCGGTGGTGGATCTTAAACCT
GTGCAGGAGGGGCTTAGCATTGAGCTGCTCAACACCCGCGTCAGCGACGAACAGCTCTATTTACTAGACGTTAAAGACTT
CTCGACGCCAGTTGAAAGTGTTGAAGTGTTCCGTGATGTGTCAGCGACGCGTTTGCTGGCGTCTGTCTCGGGGGAGTTTC
GCCATGAATATCGTTTGACTGGGCGCTATTTGGAAGTGACGGTCAGTCGCATAGAAACCCCGCAGCAGGCCGAGGAGAAA
AGCATCCTAGAAAAAGAGGGCAAGCTTATCTCGATCAACTTCCAAGACATTCCGGTGAGGAACGTGTTGCAACTGATCGC
GGACTACAACGGTTTCAATCTAGTCGTCTCCGATTCCGTCACGGGTAATCTGACCTTGCGTTTGGATGGTGTGCCGTGGC
AGCAAGTGCTCGACATCATTTTGCAAGTCAAAGGGCTCGACAAGCGGGTGGAAGGCAATGTGGTGCTGATCGCGCCAAAA
GAAGAGTTAGATTTGCGTGAGAAGCAGCATCTGGAAAAGCAGCGCTTGGCGGAAGAGTTAGGCACACTCAAATCGGAAAT
CATCAAGGTGAACTTTGCCAAAGCGTCCGACATTGCCGAGATGATCAGCGGCACGGAGTCGGTCAGCATGCTGTCCGAGC
GCGGTAGCATCGCGATTGATGAACGTACGAACTCCTTGCTACTACGAGAACTGCCGGAAAACATTGCGGTGATTCGGGAG
ATTGTCAATTCGCTCGATATTCCGGTCAAACAGGTGCAAATTGAAGCACGCATTGTCACCGTCAATGAAGGCAATTTGGA
TGAGTTGGGCGTGCGTTGGGGCTTCACCTCGATCAACGGCAGCCACACGGTGGGCGGTTCGATCGAGAACAACTTGGCGA
GCATCGGTTTGTACAACGCGGCTGGTGGCGGTTCTGGCTCAGGAGGCGATAGCGGTGGCGGCTCTAGCAGCATCGACGAT
TTTCTAAACGTCAATTTGGGGGCGACCTCCGGCAACGCATCAAGCATCGCTTTCCAAGTTGCCAAGCTGGGCTCGGACCT
GCTGCTCGACCTAGAGCTGTCGGCGCTGCAGCGAGAGTCAAAAGCGGAGATCATTTCCAGCCCGCGTCTGATTACCACCA
ATAAAAAGCCGGCCTACATCGAACAAGGGACCGAAATTCCCTATCTGGAATCGTCCTCCAGTGGTGCGACCACCGTTTCG
TTCAAAAAAGCGGTACTGAGTTTGAAAGTCACGCCGCAGATCACCCCGGATAACCGTCTGGTGCTCGATCTTAGCGTGAC
ACAAGACAGGCCGGGTGAAGTGGTGAAAACCGGTACGGGTGAAGCGGTGGCGATTGATACCCAACGTATCGGCACTCAGG
TGTTGGTTAACAATGGTGAAACCGTGGTTCTTGGCGGCATTTTCCAACACAGCATCACCAGTACGGTCGACAAAGTGCCT
TTGCTGGGCGACCTGCCACTGCTTGGCGCGCTGTTTCGCCGCAGCTATGAAAATATCGGTAAACGGGAACTGTTGATCTT
TGTGACACCAAAGGTGGTTATTCAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(266-331)

Bacterial type II and III secretion system protein (Secretin)

(435-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099MFP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

78.849

99.328

0.783
  pilQ Vibrio cholerae strain A1552

78.739

93.277

0.734
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

78.739

93.277

0.734
  pilQ Pseudomonas aeruginosa PAK

40.754

93.613

0.382
  pilQ Legionella pneumophila strain ERS1305867

40.647

93.445

0.38
  pilQ Legionella pneumophila strain Lp02

40.647

93.445

0.38
  comQ Acinetobacter baylyi ADP1

37.966

99.16

0.376
  pilQ Acinetobacter baumannii strain A118

36.486

99.496

0.363
  pilQ Acinetobacter baumannii D1279779

36.486

99.496

0.363