Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   J9247_RS19615 Genome accession   NZ_CP072783
Coordinates   4216279..4216893 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain LICME WGH-6     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4211279..4221893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9247_RS19595 (J9247_19595) - 4212721..4213350 (+) 630 WP_033968906.1 CsiV family protein -
  J9247_RS19600 (J9247_19600) - 4213397..4214134 (-) 738 WP_124119728.1 S-methyl-5'-thioinosine phosphorylase -
  J9247_RS19605 (J9247_19605) nagZ 4214146..4215144 (-) 999 WP_042168972.1 beta-N-acetylhexosaminidase -
  J9247_RS19610 (J9247_19610) psrA 4215346..4216047 (-) 702 WP_061194282.1 transcriptional regulator PsrA -
  J9247_RS19615 (J9247_19615) dinR/lexA 4216279..4216893 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  J9247_RS19620 (J9247_19620) sulA 4216905..4217387 (+) 483 WP_033968910.1 SOS-induced cell division inhibitor SulA -
  J9247_RS19625 (J9247_19625) - 4217408..4217641 (-) 234 WP_003109483.1 hypothetical protein -
  J9247_RS19630 (J9247_19630) - 4217847..4218365 (-) 519 WP_121357957.1 DUF6586 family protein -
  J9247_RS19635 (J9247_19635) topA 4218472..4221078 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  J9247_RS19640 (J9247_19640) - 4221169..4221432 (-) 264 WP_033968913.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=484910 J9247_RS19615 WP_003091196.1 4216279..4216893(+) (dinR/lexA) [Pseudomonas aeruginosa strain LICME WGH-6]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=484910 J9247_RS19615 WP_003091196.1 4216279..4216893(+) (dinR/lexA) [Pseudomonas aeruginosa strain LICME WGH-6]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTCGCGCGCAAGG
GTGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTACCGGTGATCGGACGTGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTAGTCGCGCGGATCGGCGAGGAGGTCACA
GTGAAACGTTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387