Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC796_RS17670 Genome accession   NZ_CP061561
Coordinates   3624482..3625708 (+) Length   408 a.a.
NCBI ID   WP_019456773.1    Uniprot ID   A0A7H2PQF8
Organism   Acinetobacter seifertii strain AS73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3619482..3630708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC796_RS17635 (IC796_17630) rimP 3620154..3620678 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  IC796_RS17655 (IC796_17650) secG 3621316..3621645 (-) 330 WP_191036711.1 preprotein translocase subunit SecG -
  IC796_RS17660 (IC796_17655) tpiA 3621658..3622452 (-) 795 WP_049064232.1 triose-phosphate isomerase -
  IC796_RS17665 (IC796_17660) pilB 3622742..3624454 (+) 1713 WP_151682978.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IC796_RS17670 (IC796_17665) pilC 3624482..3625708 (+) 1227 WP_019456773.1 type II secretion system F family protein Machinery gene
  IC796_RS20640 (IC796_17670) pilD 3625708..3626568 (+) 861 WP_151682979.1 prepilin peptidase Machinery gene
  IC796_RS17680 (IC796_17675) coaE 3626570..3627166 (+) 597 WP_151682980.1 dephospho-CoA kinase -
  IC796_RS17685 (IC796_17680) - 3627163..3628077 (-) 915 WP_151682981.1 DMT family transporter -
  IC796_RS17690 (IC796_17685) rlmB 3628113..3628862 (-) 750 WP_151682982.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IC796_RS17695 (IC796_17690) - 3628965..3629291 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45040.62 Da        Isoelectric Point: 10.0201

>NTDB_id=483219 IC796_RS17670 WP_019456773.1 3624482..3625708(+) (pilC) [Acinetobacter seifertii strain AS73]
MAVKKAQMMPTFAYEGVDRKGLKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEIEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQEYWFIMIIAFGAIII
AFLEAKKRSKKFRDGLDKLALKLPIFGNLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTAMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=483219 IC796_RS17670 WP_019456773.1 3624482..3625708(+) (pilC) [Acinetobacter seifertii strain AS73]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCTTAAAAATTAAGGGGGA
ACTTCCAGCTAAAAATATGGCTTTAGCTAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACCATACGTGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTTGATATTACTATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAGAAAATCCAGCCATGCGTGAGGT
AGTACTTGGTATTAAAGGTGAAATTGAGGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAGTATCCGCAACATTTTGACA
ATTTATTTTGTTCACTTGTGGAATCTGGAGAACAATCAGGCGCTCTCGAAACCATGCTAGATCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCAATGAAATATCCGGCCACGGTTATTGTAGTAGCGATTGTGGT
GACTATTATTTTGATGGTTAAAGTCGTACCCGTTTTCCAAGATCTGTTTTCTTCATTTGGAGCAGAATTACCAGCATTCA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAAGAATATTGGTTCATCATGATTATTGCATTTGGCGCAATTATTATA
GCCTTTTTAGAAGCTAAAAAACGTAGTAAAAAGTTTAGAGATGGCTTAGATAAACTGGCGCTCAAATTACCTATTTTTGG
GAACTTGGTCTATAAAGCAATTATTGCCCGTTATAGCCGGACACTTGCCACAACATTTGCAGCAGGTGTTCCGCTCATTG
ATGCACTTGAGTCGACTGCTGGTGCAACCAATAATGTCATCTATGAAAAAGCCGTTATGAAAATTCGTGAAGATGTAGCA
ACAGGACAACAACTTCAGTTTGCCATGCGTGTATCTAACCGTTTTCCTTCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTTGATAAAGTGGCTACCTATTATGAAAATGAAGTTGATAATGCAGTTGATGGTT
TAACTGCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTGGTAGGCGGTCTAGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGTTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PQF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

84.804

100

0.848
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria meningitidis 44/76-A

46.867

97.794

0.458
  pilG Neisseria gonorrhoeae MS11

46.867

97.794

0.458
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.447

98.775

0.4
  pilC Thermus thermophilus HB27

37.157

98.284

0.365