Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IC806_RS04875 Genome accession   NZ_CP061471
Coordinates   972814..974535 (-) Length   573 a.a.
NCBI ID   WP_063193014.1    Uniprot ID   A0A142D277
Organism   Geobacillus zalihae strain SURF-114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967814..979535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC806_RS04850 (IC806_04850) - 968577..968825 (+) 249 WP_015375366.1 DUF2627 domain-containing protein -
  IC806_RS04855 (IC806_04855) - 968901..969629 (-) 729 WP_020754118.1 glycerophosphodiester phosphodiesterase -
  IC806_RS04860 (IC806_04860) - 969738..969890 (+) 153 WP_011231868.1 YycC family protein -
  IC806_RS04865 (IC806_04865) spo0A 970042..970860 (-) 819 WP_025038882.1 sporulation transcription factor Spo0A -
  IC806_RS04870 (IC806_04870) spoIVB 971245..972540 (-) 1296 WP_015375368.1 SpoIVB peptidase -
  IC806_RS04875 (IC806_04875) recN 972814..974535 (-) 1722 WP_063193014.1 DNA repair protein RecN Machinery gene
  IC806_RS04880 (IC806_04880) ahrC 974662..975111 (-) 450 WP_011231872.1 transcriptional regulator AhrC/ArgR -
  IC806_RS04885 (IC806_04885) - 975161..976009 (-) 849 WP_063193015.1 TlyA family RNA methyltransferase -
  IC806_RS04890 (IC806_04890) dxs 976013..977905 (-) 1893 WP_033004878.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IC806_RS04895 (IC806_04895) - 978153..979046 (-) 894 WP_012820586.1 polyprenyl synthetase family protein -
  IC806_RS04900 (IC806_04900) - 979050..979280 (-) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64297.60 Da        Isoelectric Point: 4.9678

>NTDB_id=482408 IC806_RS04875 WP_063193014.1 972814..974535(-) (recN) [Geobacillus zalihae strain SURF-114]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEAL
ARYRAVYERYEELGKKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDAALKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=482408 IC806_RS04875 WP_063193014.1 972814..974535(-) (recN) [Geobacillus zalihae strain SURF-114]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTCGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCGATCATCATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGGGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCATGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATCGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCGGTGCTGCGCGACATCGGGGCGACGCTTGTGGATATTCACGGCCAGCATG
AACATCAAGAACTGATGGATCCGTCCCGCCATCTGCCGCTTTTAGACGAGTTCGGCGGCCTAGAGGCAGCAGAGGCGCTT
GCTCGCTACCGCGCCGTCTACGAGCGGTATGAGGAGCTCGGAAAAAAATTGAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGTTGACGTTTCAGTTGCGCGAAATCGAACAGGCGGCGCTCGAGCCGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGTTATGAGGCCCTCTCCGGA
GAGGGACGCGGACTTGATTCGATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAGCGCTCAAAGA
TGCGCATGAAACGACGTCGAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AGTACGACCCAGAGCGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACG
ATCGCCGATATTTTGCACTATGCCGAGACGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTTAAGCAGCAGCTCGCTCTGGTGACGGACGAGTTGCTTACGGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CCCAGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGCGAAGGATCGCTTGACGCCCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGACGGCATCGATGTCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTCGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCGATGGCGGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATCGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142D277

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.021

100

0.621