Detailed information NTG0480773

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: J5X95_RS11515
• Genome accession: NZ_CP072120
• Coordinates: 2270954..2272084 (+)
• Length: 376 a.a.
• NCBI ID: WP_039062639.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain GKT04
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2265954..2277084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5X95_RS21095 (J5X95_11495)	-	2267901..2268155 (+)	255	Protein_2236	peptidoglycan-binding domain-containing protein	-
J5X95_RS11500 (J5X95_11500)	-	2268575..2269342 (+)	768	WP_080760371.1	YiiX/YebB-like N1pC/P60 family cysteine hydrolase	-
J5X95_RS11505 (J5X95_11505)	-	2269405..2270538 (+)	1134	WP_039062638.1	hypothetical protein	-
J5X95_RS11510 (J5X95_11510)	-	2270614..2270817 (+)	204	WP_228767510.1	DUF2651 family protein	-
J5X95_RS11515 (J5X95_11515)	rapC	2270954..2272084 (+)	1131	WP_039062639.1	Rap family tetratricopeptide repeat protein	Regulator
J5X95_RS20810	-	2272084..2272218 (+)	135	WP_254922222.1	hypothetical protein	-
J5X95_RS20815	-	2272578..2272808 (-)	231	WP_039062640.1	hypothetical protein	-
J5X95_RS11520 (J5X95_11520)	-	2273188..2273745 (-)	558	WP_007410197.1	hypothetical protein	-
J5X95_RS11525 (J5X95_11525)	-	2273841..2274419 (-)	579	WP_020953893.1	hypothetical protein	-
J5X95_RS11530 (J5X95_11530)	-	2274644..2274910 (-)	267	WP_014416946.1	hypothetical protein	-
J5X95_RS11535 (J5X95_11535)	-	2275016..2276293 (-)	1278	WP_094032124.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44739.21 Da
• Isoelectric Point: 5.5626

>NTDB_id=480773 J5X95_RS11515 WP_039062639.1 2270954..2272084(+) (rapC) [Bacillus amyloliquefaciens strain GKT04]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEKKRLWSDFAELTEKLGDFHFEKRNYVEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=480773 J5X95_RS11515 WP_039062639.1 2270954..2272084(+) (rapC) [Bacillus amyloliquefaciens strain GKT04]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTCTAAATCGTGCTCGGA
CTTCTAATGAAGAAGAATATTTAGCTAAATTAAAAATCATTAATTCATTATACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAAAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGTAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (145-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	99.202	0.372