Detailed information NTG0480760

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: J5X95_RS10740
• Genome accession: NZ_CP072120
• Coordinates: 2086998..2088119 (+)
• Length: 373 a.a.
• NCBI ID: WP_094031474.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain GKT04
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2081998..2093119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5X95_RS10720 (J5X95_10720)	-	2082307..2083302 (-)	996	WP_094031472.1	DUF5105 domain-containing protein	-
J5X95_RS10725 (J5X95_10725)	-	2083429..2084829 (+)	1401	WP_094031473.1	YcdB/YcdC domain-containing protein	-
J5X95_RS10730 (J5X95_10730)	-	2085030..2086388 (+)	1359	WP_043021503.1	YcdB/YcdC domain-containing protein	-
J5X95_RS10735 (J5X95_10735)	-	2086385..2086888 (-)	504	WP_011996280.1	M15 family metallopeptidase	-
J5X95_RS10740 (J5X95_10740)	rapF	2086998..2088119 (+)	1122	WP_094031474.1	Rap family tetratricopeptide repeat protein	Regulator
J5X95_RS10745 (J5X95_10745)	-	2088235..2089014 (+)	780	WP_039252868.1	glucose 1-dehydrogenase	-
J5X95_RS10750 (J5X95_10750)	-	2089098..2090777 (+)	1680	WP_094031475.1	glycoside hydrolase family 13 protein	-
J5X95_RS10755 (J5X95_10755)	-	2090963..2091922 (+)	960	WP_015239100.1	metal ABC transporter substrate-binding protein	-
J5X95_RS10760 (J5X95_10760)	-	2091977..2092672 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44361.59 Da
• Isoelectric Point: 5.0806

>NTDB_id=480760 J5X95_RS10740 WP_094031474.1 2086998..2088119(+) (rapF) [Bacillus amyloliquefaciens strain GKT04]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCVRGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=480760 J5X95_RS10740 WP_094031474.1 2086998..2088119(+) (rapF) [Bacillus amyloliquefaciens strain GKT04]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGTGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402