Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   J5X95_RS00685 Genome accession   NZ_CP072120
Coordinates   108998..110488 (-) Length   496 a.a.
NCBI ID   WP_094031812.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103998..115488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS00655 (J5X95_00655) gudB 104063..105337 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  J5X95_RS00660 (J5X95_00660) - 105498..106082 (-) 585 WP_003153412.1 genetic competence negative regulator -
  J5X95_RS00665 (J5X95_00665) - 106234..107022 (-) 789 WP_025284937.1 metallophosphoesterase -
  J5X95_RS00670 (J5X95_00670) - 107109..107567 (-) 459 WP_007409443.1 YpbF family protein -
  J5X95_RS00675 (J5X95_00675) - 107636..108418 (-) 783 WP_094031811.1 LysM peptidoglycan-binding domain-containing protein -
  J5X95_RS00680 (J5X95_00680) - 108396..108983 (-) 588 WP_015240111.1 CPBP family intramembrane glutamic endopeptidase -
  J5X95_RS00685 (J5X95_00685) recS 108998..110488 (-) 1491 WP_094031812.1 RecQ family ATP-dependent DNA helicase Machinery gene
  J5X95_RS00690 (J5X95_00690) - 110481..111539 (-) 1059 WP_032870103.1 helix-turn-helix domain-containing protein -
  J5X95_RS00695 (J5X95_00695) - 111808..112056 (+) 249 WP_003153403.1 ferredoxin -
  J5X95_RS00700 (J5X95_00700) - 112197..112769 (-) 573 WP_015240114.1 ECF transporter S component -
  J5X95_RS00705 (J5X95_00705) serA 113258..114835 (+) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55958.97 Da        Isoelectric Point: 6.2484

>NTDB_id=480684 J5X95_RS00685 WP_094031812.1 108998..110488(-) (recS) [Bacillus amyloliquefaciens strain GKT04]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVSVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTGDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=480684 J5X95_RS00685 WP_094031812.1 108998..110488(-) (recS) [Bacillus amyloliquefaciens strain GKT04]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCTGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCTCTGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGACCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACTGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGGAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGGGTGATGAACGAAAGCTTC
GGGACGTCCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683