Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J5Z97_RS06885 Genome accession   NZ_CP072112
Coordinates   1358730..1359338 (+) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain M08500     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1353730..1364338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z97_RS06855 (J5Z97_06855) - 1353978..1354460 (+) 483 WP_002988938.1 S-ribosylhomocysteine lyase -
  J5Z97_RS06860 (J5Z97_06860) - 1354607..1356076 (-) 1470 WP_063662313.1 cell division site-positioning protein MapZ family protein -
  J5Z97_RS06865 (J5Z97_06865) - 1356090..1357244 (-) 1155 WP_023611635.1 class I SAM-dependent RNA methyltransferase -
  J5Z97_RS06875 (J5Z97_06875) gpsB 1357689..1358015 (-) 327 WP_002983626.1 cell division regulator GpsB -
  J5Z97_RS06880 (J5Z97_06880) - 1358134..1358649 (-) 516 WP_208769254.1 DUF1273 domain-containing protein -
  J5Z97_RS06885 (J5Z97_06885) recU 1358730..1359338 (+) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  J5Z97_RS06890 (J5Z97_06890) pbp1a 1359325..1361490 (+) 2166 WP_023611927.1 penicillin-binding protein PBP1A -
  J5Z97_RS06895 (J5Z97_06895) pepC 1361956..1363293 (-) 1338 WP_011054844.1 aminopeptidase C -
  J5Z97_RS06900 (J5Z97_06900) nadE 1363478..1364302 (-) 825 WP_011054845.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=480567 J5Z97_RS06885 WP_002983622.1 1358730..1359338(+) (recU) [Streptococcus pyogenes strain M08500]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=480567 J5Z97_RS06885 WP_002983622.1 1358730..1359338(+) (recU) [Streptococcus pyogenes strain M08500]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCATACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5