Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IBX32_RS00675 | Genome accession | NZ_CP061052 |
| Coordinates | 140488..140940 (+) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Pasteurella multocida strain PS3536-1p | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 141476..157878 | 140488..140940 | flank | 536 |
Gene organization within MGE regions
Location: 140488..157878
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBX32_RS00675 (IBX32_00675) | ssb | 140488..140940 (+) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
| IBX32_RS00680 (IBX32_00680) | - | 141247..141435 (+) | 189 | WP_011200812.1 | hypothetical protein | - |
| IBX32_RS10995 | - | 141596..141778 (+) | 183 | WP_233791173.1 | hypothetical protein | - |
| IBX32_RS00690 (IBX32_00690) | - | 141778..143088 (+) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| IBX32_RS00695 (IBX32_00695) | tet(H) | 143184..144386 (-) | 1203 | WP_006248867.1 | tetracycline efflux MFS transporter Tet(H) | - |
| IBX32_RS00700 (IBX32_00700) | - | 144528..144815 (+) | 288 | WP_143432442.1 | plasmid fertility inhibition factor family protein | - |
| IBX32_RS11095 | - | 144733..144936 (-) | 204 | WP_199764664.1 | N-6 DNA methylase | - |
| IBX32_RS10965 | - | 144971..145186 (-) | 216 | WP_021265564.1 | hypothetical protein | - |
| IBX32_RS00710 (IBX32_00710) | - | 145806..146594 (-) | 789 | WP_031192893.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA31 | - |
| IBX32_RS00715 (IBX32_00715) | - | 146829..147143 (-) | 315 | WP_000349485.1 | helix-turn-helix transcriptional regulator | - |
| IBX32_RS00720 (IBX32_00720) | - | 147255..148289 (+) | 1035 | WP_021265566.1 | permease | - |
| IBX32_RS00725 (IBX32_00725) | - | 148302..149579 (+) | 1278 | WP_011872831.1 | ISL3 family transposase | - |
| IBX32_RS00730 (IBX32_00730) | tet(H) | 149966..151168 (-) | 1203 | WP_006248867.1 | tetracycline efflux MFS transporter Tet(H) | - |
| IBX32_RS00735 (IBX32_00735) | tetR(H) | 151260..151883 (+) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| IBX32_RS00740 (IBX32_00740) | - | 151886..152404 (-) | 519 | WP_006248869.1 | hypothetical protein | - |
| IBX32_RS00745 (IBX32_00745) | - | 152453..152632 (-) | 180 | WP_006248870.1 | hypothetical protein | - |
| IBX32_RS00750 (IBX32_00750) | - | 152742..152876 (+) | 135 | WP_015587091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| IBX32_RS00755 (IBX32_00755) | - | 152966..154513 (-) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| IBX32_RS00760 (IBX32_00760) | - | 154526..154981 (-) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| IBX32_RS00765 (IBX32_00765) | - | 155163..155579 (-) | 417 | WP_316244961.1 | DUF6803 family protein | - |
| IBX32_RS00770 (IBX32_00770) | - | 155482..156249 (+) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| IBX32_RS00775 (IBX32_00775) | - | 156788..157498 (-) | 711 | WP_006248874.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=480143 IBX32_RS00675 WP_012340854.1 140488..140940(+) (ssb) [Pasteurella multocida strain PS3536-1p]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=480143 IBX32_RS00675 WP_012340854.1 140488..140940(+) (ssb) [Pasteurella multocida strain PS3536-1p]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |