Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   J5D22_RS05815 Genome accession   NZ_CP071977
Coordinates   1255819..1256868 (+) Length   349 a.a.
NCBI ID   WP_209505558.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5105     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1250819..1261868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D22_RS05800 (J5D22_05800) - 1251748..1252974 (-) 1227 WP_209505552.1 DUF874 family protein -
  J5D22_RS05805 (J5D22_05805) asd 1253402..1254442 (-) 1041 WP_209505554.1 aspartate-semialdehyde dehydrogenase -
  J5D22_RS05810 (J5D22_05810) hisS 1254429..1255757 (-) 1329 WP_209505556.1 histidine--tRNA ligase -
  J5D22_RS05815 (J5D22_05815) waaF 1255819..1256868 (+) 1050 WP_209505558.1 lipopolysaccharide heptosyltransferase II Regulator
  J5D22_RS05820 (J5D22_05820) - 1257007..1257387 (-) 381 WP_000744161.1 hypothetical protein -
  J5D22_RS05825 (J5D22_05825) fusA 1257923..1260001 (-) 2079 WP_209505560.1 elongation factor G -
  J5D22_RS05830 (J5D22_05830) rpsG 1260013..1260480 (-) 468 WP_001254355.1 30S ribosomal protein S7 -
  J5D22_RS05835 (J5D22_05835) rpsL 1260496..1260903 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39415.15 Da        Isoelectric Point: 9.7783

>NTDB_id=480132 J5D22_RS05815 WP_209505558.1 1255819..1256868(+) (waaF) [Helicobacter pylori strain MT5105]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAYFVLVGPTITCELFKKDEKIETVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQSFRSLFLSHAIIAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLQAARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=480132 J5D22_RS05815 WP_209505558.1 1255819..1256868(+) (waaF) [Helicobacter pylori strain MT5105]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAAAACCACTACCCTAATGCGTATTTTGTCTTAGTGGGCCCAACCATTACGTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAACCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATCTTTTCGTTCTTTGTTTCTCAGCCATGCGATAATCGCCGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTGCCCTTA
AAATTAGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTCGCGGCTGCTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTAGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364