Detailed information NTG0480126

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: J5D22_RS04780
• Genome accession: NZ_CP071977
• Coordinates: 1030000..1031217 (+)
• Length: 405 a.a.
• NCBI ID: WP_209505413.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5105
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1025000..1036217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D22_RS04765 (J5D22_04765)	-	1025422..1027352 (+)	1931	Protein_948	type IA DNA topoisomerase	-
J5D22_RS08020	-	1027352..1027480 (+)	129	WP_283957852.1	hypothetical protein	-
J5D22_RS04770 (J5D22_04770)	-	1027482..1028471 (+)	990	WP_209505409.1	virB8 family protein	-
J5D22_RS04775 (J5D22_04775)	-	1028468..1030003 (+)	1536	WP_209505411.1	TrbG/VirB9 family P-type conjugative transfer protein	-
J5D22_RS04780 (J5D22_04780)	comB10	1030000..1031217 (+)	1218	WP_209505413.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D22_RS04785 (J5D22_04785)	-	1031320..1031616 (+)	297	WP_021187241.1	hypothetical protein	-
J5D22_RS04790 (J5D22_04790)	-	1031606..1031869 (+)	264	WP_021187242.1	hypothetical protein	-
J5D22_RS04795 (J5D22_04795)	-	1031866..1032165 (+)	300	WP_000660145.1	hypothetical protein	-
J5D22_RS04800 (J5D22_04800)	-	1032165..1033107 (+)	943	Protein_956	ATPase, T2SS/T4P/T4SS family	-
J5D22_RS04805 (J5D22_04805)	-	1033104..1033559 (+)	456	WP_000795452.1	hypothetical protein	-
J5D22_RS04810 (J5D22_04810)	-	1033556..1033846 (+)	291	WP_000159813.1	hypothetical protein	-
J5D22_RS04815 (J5D22_04815)	-	1034087..1034983 (+)	897	WP_257615741.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 45864.05 Da
• Isoelectric Point: 10.2375

>NTDB_id=480126 J5D22_RS04780 WP_209505413.1 1030000..1031217(+) (comB10) [Helicobacter pylori strain MT5105]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINQVKPNDETKSVNE
NIEKTQKDLNDFNALVQKLPNLPKDFNKTLIKPQNPSFNYNTANEDEKNRLMILASRISSQKETQPPISIKNSVSNTKSK
EKRELEKEYGSNGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNKVLAKFF
NEEKE

Nucleotide

• Length: 1218 bp

>NTDB_id=480126 J5D22_RS04780 WP_209505413.1 1030000..1031217(+) (comB10) [Helicobacter pylori strain MT5105]
ATGAAAAAACTTCTTTTACTCTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGGTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACCATCAATCAAGTGAAGCCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAAATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGACTTTAA
TAAAACACTTATTAAACCACAAAATCCATCCTTCAACTACAATACCGCTAACGAAGATGAAAAAAACCGCCTTATGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCCATTTCTATAAAAAATAGCGTTTCTAACACAAAATCTAAA
GAAAAACGAGAACTTGAAAAAGAATACGGCTCTAACGGGTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTAAGAACGATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGATTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTCAATATTATTTTAAGCGATGCTAAGGGAGCTGATGTTAAGGGCTATAACGGCATGATAGGCACGCTCCATAACAAAT
ATTGGGAACGCTATGGCATTCCTTTATCCTTAAGCACTTTGTCAAACGGACTACTCATAGGACTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGAGGCGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGACAAAC
TGGTATCAGCCTGAATAACATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAACCCATTATCACTATTAGAGAAG
GAAGCCATATCTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATAAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	56.089	66.914	0.375