Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBM01240149_RS15015 Genome accession   NC_017514
Coordinates   1953285..1953749 (-) Length   154 a.a.
NCBI ID   WP_025169210.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240149     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1951890..1952543 1953285..1953749 flank 742


Gene organization within MGE regions


Location: 1951890..1953749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240149_RS10050 (NMBM01240149_1779) - 1951890..1952543 (-) 654 WP_002218698.1 IS1595 family transposase -
  NMBM01240149_RS15550 - 1952663..1953121 (-) 459 WP_014575148.1 hypothetical protein -
  NMBM01240149_RS15015 comE 1953285..1953749 (-) 465 WP_025169210.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16478.76 Da        Isoelectric Point: 10.9585

>NTDB_id=47984 NMBM01240149_RS15015 WP_025169210.1 1953285..1953749(-) (comE) [Neisseria meningitidis M01-240149]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPATTAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=47984 NMBM01240149_RS15015 WP_025169210.1 1953285..1953749(-) (comE) [Neisseria meningitidis M01-240149]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCAAAAGCCCCCGCCAAACCGGCAACGACCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721
  comE Neisseria gonorrhoeae MS11

90.984

79.221

0.721

Multiple sequence alignment