Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   J4A01_RS02245 Genome accession   NZ_CP071932
Coordinates   440948..441382 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain CAS02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 435948..446382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4A01_RS02215 (J4A01_02200) - 436620..437480 (+) 861 WP_023356711.1 SDR family oxidoreductase -
  J4A01_RS02220 (J4A01_02205) - 437493..437996 (+) 504 WP_032872931.1 D-lyxose/D-mannose family sugar isomerase -
  J4A01_RS02225 (J4A01_02210) - 438084..438707 (+) 624 WP_032872933.1 GNAT family N-acetyltransferase -
  J4A01_RS02230 (J4A01_02215) - 438714..439136 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  J4A01_RS02235 (J4A01_02220) - 439635..440444 (+) 810 WP_032872935.1 lipid II flippase Amj family protein -
  J4A01_RS02240 (J4A01_02225) - 440482..440772 (-) 291 WP_003156265.1 DUF3817 domain-containing protein -
  J4A01_RS02245 (J4A01_02230) lrpC 440948..441382 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  J4A01_RS02250 (J4A01_02235) - 441446..443632 (+) 2187 WP_029326219.1 DNA topoisomerase III -
  J4A01_RS02255 (J4A01_02240) - 443866..444951 (+) 1086 WP_032872937.1 hypothetical protein -
  J4A01_RS02260 (J4A01_02245) - 444932..445780 (+) 849 WP_032872939.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=479549 J4A01_RS02245 WP_003156263.1 440948..441382(+) (lrpC) [Bacillus amyloliquefaciens strain CAS02]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=479549 J4A01_RS02245 WP_003156263.1 440948..441382(+) (lrpC) [Bacillus amyloliquefaciens strain CAS02]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCTTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTCTCCTGCATTGTTGAAGCGACAGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGCTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799