Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IAG39_RS09850 Genome accession   NZ_CP061008
Coordinates   2106219..2106638 (-) Length   139 a.a.
NCBI ID   WP_118934458.1    Uniprot ID   A0A424W5G7
Organism   Achromobacter xylosoxidans strain GD03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2101219..2111638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG39_RS09805 (IAG39_09805) - 2101721..2101939 (-) 219 WP_118934473.1 DUF4224 domain-containing protein -
  IAG39_RS09810 (IAG39_09810) - 2102034..2102345 (-) 312 WP_124260407.1 hypothetical protein -
  IAG39_RS09815 (IAG39_09815) - 2102342..2102614 (-) 273 WP_118934469.1 hypothetical protein -
  IAG39_RS09820 (IAG39_09820) - 2102656..2102934 (-) 279 WP_118934468.1 hypothetical protein -
  IAG39_RS09825 (IAG39_09825) - 2102927..2103301 (-) 375 WP_118934466.1 hypothetical protein -
  IAG39_RS09830 (IAG39_09830) - 2103291..2104667 (-) 1377 WP_118934464.1 hypothetical protein -
  IAG39_RS09835 (IAG39_09835) - 2104664..2104912 (-) 249 WP_118934462.1 hypothetical protein -
  IAG39_RS09840 (IAG39_09840) - 2104916..2105485 (-) 570 WP_118934460.1 Lar family restriction alleviation protein -
  IAG39_RS09845 (IAG39_09845) - 2105487..2105651 (-) 165 WP_165867960.1 hypothetical protein -
  IAG39_RS09850 (IAG39_09850) ssb 2106219..2106638 (-) 420 WP_118934458.1 single-stranded DNA-binding protein Machinery gene
  IAG39_RS09855 (IAG39_09855) - 2106635..2107285 (-) 651 WP_118934456.1 ERF family protein -
  IAG39_RS09860 (IAG39_09860) - 2107349..2107840 (-) 492 WP_205736620.1 HNH endonuclease -
  IAG39_RS09865 (IAG39_09865) - 2107850..2108017 (-) 168 WP_165867959.1 hypothetical protein -
  IAG39_RS09870 (IAG39_09870) - 2108014..2108334 (-) 321 WP_124260406.1 hypothetical protein -
  IAG39_RS09875 (IAG39_09875) - 2108338..2108610 (-) 273 WP_118934452.1 hypothetical protein -
  IAG39_RS09880 (IAG39_09880) - 2108674..2108976 (-) 303 WP_118934450.1 hypothetical protein -
  IAG39_RS09885 (IAG39_09885) - 2108985..2109182 (-) 198 WP_118934449.1 hypothetical protein -
  IAG39_RS09890 (IAG39_09890) - 2109179..2109364 (-) 186 WP_118934447.1 hypothetical protein -
  IAG39_RS09895 (IAG39_09895) - 2109903..2110193 (-) 291 WP_118934445.1 hypothetical protein -
  IAG39_RS09900 (IAG39_09900) - 2110686..2110907 (-) 222 WP_118934443.1 hypothetical protein -
  IAG39_RS09905 (IAG39_09905) - 2111327..2111626 (-) 300 WP_118934441.1 hypothetical protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15521.36 Da        Isoelectric Point: 5.0337

>NTDB_id=479437 IAG39_RS09850 WP_118934458.1 2106219..2106638(-) (ssb) [Achromobacter xylosoxidans strain GD03]
MSNDLNRCEFIGRLGKDPDVRYSPEGSAVCNFSLAVGWKTKDKEGVEWVRIVAFGKLGEICGEYLTKGKQVYVSGRMTTR
KWTDKDSGQDRYATEVVADQTQMLGGKGDEVDRESAQRPARQPAMTARTGEDFDSEIPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=479437 IAG39_RS09850 WP_118934458.1 2106219..2106638(-) (ssb) [Achromobacter xylosoxidans strain GD03]
ATGAGCAATGACCTGAACCGATGCGAATTCATCGGGAGGCTCGGCAAGGATCCTGACGTTCGGTATTCACCCGAGGGTTC
CGCCGTCTGCAATTTCTCCTTAGCGGTTGGTTGGAAGACCAAGGATAAGGAAGGAGTTGAATGGGTACGCATCGTCGCCT
TCGGCAAACTAGGCGAAATCTGCGGCGAGTACTTGACCAAGGGCAAACAGGTCTATGTTTCCGGGCGCATGACGACGCGC
AAATGGACCGACAAGGACAGCGGCCAGGATCGCTACGCCACCGAGGTTGTCGCTGACCAGACGCAGATGCTTGGCGGGAA
AGGTGATGAGGTGGACCGAGAATCCGCTCAACGCCCCGCACGCCAGCCGGCCATGACAGCCCGCACGGGCGAGGATTTTG
ATAGCGAAATCCCTTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

38.636

100

0.489
  ssb Neisseria meningitidis MC58

38.728

100

0.482
  ssb Neisseria gonorrhoeae MS11

38.728

100

0.482
  ssb Glaesserella parasuis strain SC1401

35.955

100

0.46